Dokdonella koreensis: I596_2589
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Entry
I596_2589 CDS
T04377
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dko
Dokdonella koreensis
Pathway
dko03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I596_2589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dko03400
]
I596_2589
Enzymes [BR:
dko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I596_2589
DNA repair and recombination proteins [BR:
dko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I596_2589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Glyco_tran_WecG
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANB18591
UniProt:
A0A160DWJ6
LinkDB
All DBs
Position
2976861..2980358
Genome browser
AA seq
1165 aa
AA seq
DB search
MPPALPSFSAPPMTLPIPASLFPSSPKQRRFWITPPGSALSWLLVETARRHAGLVIAVTR
DTHSAHALEAEIATFAGADVPVLHFPDWETLPYDLFAPHPDIVSQRIATLYRLPSLDRGV
LVVPIATLMQRLAPRSYVAGSGLVLERGQTLDLADERRRLEAAGYRNVPQVLEPGDFAVR
GALLDVFPMGSATPYRVELFDEEIDSIRTFDPETQRSAHKVEHVRLLPGREFPLTEESAK
AFRALLRERFPIDPRRCPLYQDIREGTAPAGIEYYLPLFFERTETLFDYLAPQALFVLGD
QALDAAEPFFAQAADRYDQRAHDIERPVLPPAELYLPPEHLREQLNRQLRVEVVARGDNE
HAIDTGTRPVPSLPLNQTQDTAGELKRFLGAYPGRVLITADSAGRRETLIEQLQAAGLQP
ETVASWAEFADASPDAQLPLAITVAPLERGFALDTPALALLTERELLGERAQQARRRKRA
ARDPEAVIRDLSELAIGAPIVHIDHGVGRYQGLLKLDIGGEGGEFLAIEYAKGDKLYVPV
AQLHLVSRYSGTPPELAPLHSLGGDAWERAKKRAAEKVRDVAAELLAIYAQREARVGTAM
AIDRAMYDQFAAAFPFEETPDQLQAIEAVIADLAAGRAMDRVVCGDVGFGKTEVALRAAF
VTATAGKQVAILAPTTLLAQQHYQNFRDRLADWPVRVEVLSRFKSKKETEAAIAKLTQGQ
IDIMIGTHKLLQPDVRFKDLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTLTATPIPRTL
NMAMAGLRDLSIIATPPAHRLAVKTFIGSWDPALIREAFQRELQRGGQVYFLHNEVETIE
KTARELAELVPDARIRIAHGQMAERELEQAMLDFYRQRHNVLVCTTIIESGIDVPTANTI
VINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDHRAITADAEKRLEALASLEELGAGF
TLATHDLEIRGAGELLGEEQSGQIEEVGFSLYRDMLDRAVKALKSGKVPDFDLTSEHEAE
IDLHVPALIPDDYLPDVNARLTLYKRIASATDEDQLRELQVEMIDRFGLLPDPVKQLFAT
TAIKLAATPLGIRKLELGANGGRVLFTPKPNFDPMRVIGLIQTQPRVFALDGQDKLRIKM
ELPGAAERIRTAGELLAILRGSPAR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
gtgccgccggcgctgccgtcgttttccgcaccgccgatgaccttgccgattcccgcatcc
ctgttcccctcgtcgcccaagcaacgccgattctggatcacgcccccgggatcggcactg
tcgtggctgctggtcgagacggcccgccggcacgccggcctggtgatcgcggtgacgcgc
gacacgcactcggcgcacgcgctggaagcggagatcgcgacgttcgccggagcggacgta
ccggtgctgcatttcccggattgggagacgctgccgtacgacctgttcgcgccgcacccc
gacatcgtctcgcagcgcatcgccacgctgtaccggctgccgtcgctcgaccgcggcgtc
ctggtcgtcccgatcgcgaccctgatgcagcggctggcgccgcgcagctatgtcgccggc
tccggactggtcctggagcgcggacagacgctggatctcgccgacgagcggcggcgtctg
gaagcggccggctaccggaatgtgccgcaggtgctcgaaccgggcgacttcgccgtacgc
ggcgccctgctcgacgtcttcccgatgggaagcgcgacaccctaccgggtcgagctgttc
gacgaggagatcgattcgatccgcacgttcgatccggagacccagcggtcggcgcacaaa
gtcgagcacgtgcggttgctgccggggcgcgagttcccgctgaccgaggagtcggccaag
gcgttccgcgccctgctgcgcgagcggttcccgatcgatccgcgtcgctgcccgctctat
caggacatccgcgagggcactgcgccggcgggcatcgagtactacctgccgctgttcttc
gagcgcaccgagacgctgttcgactacctcgcgccacaggccctgttcgtgctcggtgac
caggcgctggacgccgccgaaccgttcttcgcgcaggccgccgaccgctacgaccagcgc
gcgcacgacatcgagcgcccggtgctgccgccggcggagctgtacctgccgccggaacac
ctgcgcgagcagctcaaccgccagctgcgcgtcgaagtggtggcccgcggcgacaacgag
cacgcgatcgacaccggcacgcggccggtgccgagcctgcccctgaaccagacgcaggac
acggccggcgaactcaagcggttcctcggcgcctatcccggccgcgtgctgatcacggcc
gattcggccggtcggcgcgagaccctgatcgagcagttgcaggccgccggcctgcagccg
gagacggtggcgtcctgggccgaattcgccgacgcgtcgccggatgcgcagttgccattg
gcgatcacggtcgccccgctcgaacgcggattcgcactggacacgccggcgctggcgctg
ctgaccgagcgcgaactgctcggcgagcgcgcgcagcaggcccggcggcgcaagcgcgcc
gcccgcgaccccgaagcggtcatccgcgacctctcggagctggcgatcggcgcgccgatc
gtgcacatcgatcacggcgtgggccgctaccagggcctgttgaagctcgacatcggcggc
gagggcggcgagttcctcgcgatcgagtacgccaagggcgacaagctctacgtaccggtg
gcgcagttgcacctggtcagccgctactcgggcacgccgccggaactggcgccgctgcat
tcgctcggcggcgacgcctgggagcgggccaagaagcgggcggccgaaaaggtacgcgac
gtcgccgcggaactgctggcgatctacgcccagcgcgaggcgcgggtcggcaccgcgatg
gcgatcgaccgcgcgatgtacgaccagttcgccgcggcgtttccgttcgaggaaaccccc
gaccagctgcaggcgatcgaggccgtcatcgccgacctggccgccggccgtgcgatggac
cgggtggtctgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgtgccgcgttc
gtcaccgccaccgccggcaagcaggtggcgatcctggcgccgaccaccctgctcgcccag
cagcactaccagaatttccgcgaccggctggcggactggccggtccgcgtcgaggtgctg
tcgcggttcaagtcgaagaaggagaccgaggcggcgatcgccaagctgacgcagggccag
atcgacatcatgatcggcacccacaagctgctgcagcccgacgtccggttcaaggacctt
gggctggtgatcgtcgacgaggagcagcgcttcggcgtgcggcagaaggaacagctcaag
aagctgcgcgccgaggtggacctgctgacgctgaccgccacgccgatcccgcgcacgctc
aacatggcgatggccggactgcgcgacctgtcgatcatcgccacgccgccggcgcaccgg
ctggcggtcaagaccttcatcggcagctgggacccggcgctgatccgcgaggccttccag
cgcgagctgcagcgcggcggccaggtctatttcctgcacaacgaggtcgagacgatcgag
aagaccgcgcgcgagctcgcggagctggtgcccgacgcgcgcatccgcatcgcccacggc
cagatggccgagcgcgagctggagcaggcgatgctcgatttctaccggcagcggcacaac
gtcctggtctgcacgacgatcatcgagtcgggcatcgacgtacccaccgccaacacgatc
gtcatcaatcgcgccgatcgcttcggcctggcccagctgcaccagctgcggggccgcgtc
ggccgctcgcatcatcgcgcctacgcctacctggtcgtccccgatcaccgcgcgatcacc
gccgacgcggagaagcgcctggaagcgctggcctcgctggaggagctcggtgccggcttc
acgctggcgacgcacgacctggagatccgcggcgccggcgagctgctcggcgaggagcag
tccggacagatcgaggaggtcggcttctcgctgtatcgcgacatgctcgatcgcgcggtc
aaggcgctcaagtccggcaaggtgccggatttcgacctgaccagcgagcacgaggcggag
atcgacctgcacgtgcccgcgctgatcccggacgactacctgcccgacgtcaacgcccgc
ctgaccctctacaagcgcatcgccagcgctaccgacgaagaccagctgcgcgagctgcag
gtagagatgatcgaccgcttcggactgctgccggacccggtcaagcagttgttcgcgacc
accgcgatcaagctggcggcgacaccgctgggcatccgcaagctggaactcggcgccaac
gggggccgggtcctcttcacgcccaagccgaatttcgacccgatgcgcgtgatcggcctg
atccagacccagccccgcgtcttcgcgctggacgggcaggacaagctgcgcatcaagatg
gagctgcccggcgccgccgagcgcatccgcaccgccggcgagctgctggccatcctgcgc
ggatcgccggcccgatga
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