Desulfofundulus kuznetsovii: Desku_2113
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Entry
Desku_2113 CDS
T01499
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dku
Desulfofundulus kuznetsovii
Pathway
dku03410
Base excision repair
dku03430
Mismatch repair
dku03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desku_2113
03430 Mismatch repair
Desku_2113
03440 Homologous recombination
Desku_2113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dku03400
]
Desku_2113
DNA repair and recombination proteins [BR:
dku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Desku_2113
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Desku_2113
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Desku_2113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AEG15656
LinkDB
All DBs
Position
complement(2095838..2098720)
Genome browser
AA seq
960 aa
AA seq
DB search
MQKMVKEKVWRVKEENPVLQQILSRKLGISPLLSRLLVNRGVLTVEDARLFLKGNLNQAG
DPYLLPDMHRAVEIILAAIKNRKNILVYGDYDADGVTATALMVKVLERLGARVDYYIPHR
LTQGYGLHEGALQWARQAGMDLLVTVDCGISSKKEVEAAKRAGGPEIIITDHHQVPEEIP
PALAVINPQRRDSSYPFKELAGVGVALKLAQALLQAAGEGETAWHDYLDLACVGTVADIV
PLTGENRLLVKHGLPKLAATANPGLQALMQVSGVKAEKIGTREVGFALAPRLNAAGRMGD
SRMAVELLLCRDPVRAGELAAQLDRENRERQQVESRVLAEALGMLDALGRTRDLVVVLAS
PGWHPGVIGIVASKLVEILYRPVLLVSLDGGQGKGSGRSIPGFHLYQALSSCREHLLAFG
GHEGAAGFTITADRVDALREALNDYAAAVMSPDLLRPGLEIDALVSLEDIPCEVVAELES
LSPHGHGNPEPLLACCGVAVINCREVGRDGRHLKLLVRENGTVRDSIGFDLVGYLENLAP
GEAVDLAFVPSLDQWNGNVRVQLEIRDLRRAGEWEGAPPLQEPGIAPDRGMDDFLVALHT
EAEKSPVRSPYFFWPEFIQRKLAEYEQKGSGSLAAVLQIPGGLNHHAAIPLECSAFPPVA
CSAEGAPDTLQLTAELPFRIEDLRGQFARPSWLAGLADARQCLLVVVGSAHRTVELAFYL
RRVCSGPGRQVAFCHPWLSSRRRELLRQLFARGEINVLLTTPALAPALAGAGTGHLVIYN
LPYHREEWDLLLAAALAGEVQSLWLPFGAEDMQEARFYLAALAPDRDPLARLYTLLHRAA
RENSARPHGREAGSVETGGDGFSRRLAGLLRRGGCPWVQDFTVALGLKVFSELGLVEWSP
PGSGWPVSLRPAGGQKLSLEASPTYRRLHQLKKEALAWQKHALEAPVREIVAGSLTERRR
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaatggtaaaagaaaaggtctggcgtgttaaagaagagaatccggttttgcag
cagatcctttcccggaaattgggaatctcgccgctgctttcccgtttactggtcaaccgg
ggagtgttgacggttgaagatgcccggctttttcttaagggcaatttaaatcaggcggga
gatccatacctgctgccggacatgcaccgggcggtagaaataattctcgcggccataaag
aaccggaagaacattctggtttacggagattatgatgccgacggtgttaccgccaccgcc
cttatggtgaaggttttggaacggctgggtgcccgggtggattactacataccccaccgc
ctgacccagggctacggcctgcatgaaggggcgctgcagtgggcgcggcaggccgggatg
gatctcctcgtcaccgtggactgcggtatcagctcaaaaaaggaggtggaagcagcaaag
agggccggcgggccggagatcatcatcaccgatcaccaccaggtgccggaggaaatccct
cccgcactggcggtaattaacccgcagaggagggactcctcctatcccttcaaggaactg
gccggggtaggggtggccctgaaactggcccaggcgctcttgcaggccgccggcgaggga
gaaactgcctggcatgattaccttgacctggcctgcgtggggacggtagccgacattgtt
ccccttacgggggaaaaccgcctgctggtaaagcacggtttacccaaactggcggctacc
gccaatcccggactgcaggccctgatgcaggtaagcggcgtgaaggcggaaaaaataggc
accagggaggtgggcttcgccctggctccccggttgaatgccgccggccgcatgggtgac
tcccggatggccgtggaactcctgctctgccgggacccggtacgggccggggaactggcg
gcacaactggaccgggagaaccgggagcgccagcaggtggagtcccgggttctggcggag
gccctgggtatgctggatgccctggggcgcacccgggatctggtggtggtactggcttca
cccggctggcatccgggggtgattggcattgtggcctccaagctggtggaaattttatac
cggcccgtgctgctggtatccctggatggcggccaggggaagggttccggtcgcagtatt
cccggctttcacctgtaccaggctttatcttcctgccgggagcatttgctggctttcgga
gggcatgagggcgcggcgggttttaccataactgccgaccgggtggacgctttgcgggaa
gcccttaatgattatgccgctgccgtaatgtccccggacctgttgcggccagggctggag
atagacgccctggtttccctggaagacattccctgcgaagtggtggccgagctggaaagc
ctgagccctcatggccacggcaaccccgaaccgttgctggcctgctgcggtgtggcggta
attaattgccgggaagtggggcgggacggccgccacctgaaattgctggtgcgggagaat
ggaacggtacgggacagcattggttttgatctcgtcggttatctggagaatctggctccg
ggggaggcagtggatctggcttttgtgccttccctggaccagtggaacggcaatgtacgg
gtgcagctggaaatcagggatctgcgacgggccggagaatgggaaggggcacccccgctc
caggaacccggcattgccccggaccgggggatggatgattttctggttgctctacatact
gaagctgaaaaatctccagtccggagcccttatttcttctggcccgaatttatccagcgc
aaactggcagaatatgagcaaaaggggtccgggtctcttgcggcggtactgcaaattccc
ggcggcctgaaccatcatgccgctatccccctggaatgttccgcctttcccccggttgcc
tgttctgcagaaggggcaccggatacattgcagctaaccgcagaactcccctttcggata
gaagacttacgggggcaatttgcccggccatcctggctcgccgggctggccgatgcgaga
cagtgtcttctggtggtggtcggttcggcccaccgtacggtggagctggccttttacctg
cggcgggtttgttccggccccgggaggcaggtggccttttgccacccctggctgagcagc
cggcggcgggaactgctgcgccagctttttgcccggggggagataaacgtgttgctgacc
acgccggctctggcccccgccctggccggtgccgggaccggccacctggtgatttataac
ctgccctaccatcgtgaggagtgggatttgctgcttgcagcggccctggccggagaagta
cagtctctctggctgccctttggtgcggaagacatgcaggaggcccgtttttacctggcg
gccctggcgccggacagggatcccctggccaggttgtatacccttttacaccgggccgcc
agggaaaacagtgctcgcccgcatggccgggaggccggatccgtggaaacgggtggggat
ggcttttcccgccggctggccggcctgctgcgtcgcggcggctgcccctgggtgcaggat
tttacagtggcactgggtttaaaggtcttttctgagctgggtttggtggagtggtcgccc
ccgggaagcgggtggccggtttctttgcgtcctgcaggcgggcaaaagctgtccctggag
gcgtcccccacttaccgccggctgcaccagctcaaaaaagaggccctggcctggcaaaaa
catgccctggaagcccccgttcgggaaattgttgccggctctttaacagaaaggaggcgg
tga
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