Desulfofundulus kuznetsovii: Desku_2380
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Entry
Desku_2380 CDS
T01499
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dku
Desulfofundulus kuznetsovii
Pathway
dku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desku_2380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dku03019
]
Desku_2380
Messenger RNA biogenesis [BR:
dku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desku_2380
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
DUF489
Motif
Other DBs
NCBI-ProteinID:
AEG15915
LinkDB
All DBs
Position
complement(2382551..2384089)
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AA seq
512 aa
AA seq
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MQAITVAVTVIAAVAAFAIGYLVRKYLVEAKIASAETEARKIIEEAEKAAEAKKREAILE
AKEEVLRLRNEMERENKERRSELQRLERRLLQKEETLDRKIESIERKEEALNRKEAEIES
LKARLSEIYQQQVSELERISGLTSEEARQQLLADIEKEVQHEAALMIKDVENKAREEAER
RAREIISLAIQRCAADHVTETTVAVIPLPSDEMKGRIIGREGRNIRAFETLTGIDLIIDD
TPEAVILSGFDPIRREIARIALEKLIVDGRIHPARIEEMVEKARKEVEAQIREAGEQATF
ETGVHGLHPELITLLGRLKFRTSYGQNVLKHSIEVAHLAGLMAAELGVDAQIAKRAGLLH
DIGKAVDHEVEGPHVSIGVELAKKYREHPEVISAIASHHGDQEAQTITAVLVQAADAISA
ARPGARRETLEAYIKRLQKLEEIAGSFEGVEKCYAIQAGREIRIMVKPDKVDDLGAVRLS
REIAKKIEKELDYPGQIKVTIIRETRVVEYAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagctattaccgtagccgtaacggtaatcgccgcagtggctgcttttgccatcggg
tatctggttcgcaagtacctggtagaggccaagattgcttcggccgaaactgaagccagg
aagataatagaagaggcagaaaaggctgcagaggcaaaaaaacgggaagccatccttgag
gctaaggaagaagtcttgcggttacgtaatgagatggagagggagaacaaggagcgccgg
tccgaactgcaacgcctggaacggcggctgctgcaaaaggaggaaaccctcgaccgcaaa
attgaatccattgaacgcaaagaagaagcccttaaccgcaaggaggcagagattgaaagt
ctaaaagcacgtttaagtgagatttatcaacaacaggttagcgaacttgaacggatctcg
gggctgacttcagaggaagcgcgccagcagctacttgccgacattgaaaaggaagtgcaa
cacgaagcagccctgatgatcaaggatgtggaaaacaaggcccgggaggaggcggaaagg
cgcgcccgggagattatttccctggccattcagcggtgtgccgcagatcacgtcaccgaa
actacggtggcggtcattcccctgcccagcgatgagatgaaggggcgcatcattggccgg
gaagggcgcaacattcgcgcttttgaaactctaaccgggatcgatttaattatcgacgac
actccggaagcggtaattctatccgggtttgatcccatccggcgggaaattgcccgtatt
gccctggaaaagctcatcgttgacgggcgcattcaccccgcccggattgaagaaatggtt
gaaaaggcccgcaaggaagtggaagcccaaattcgcgaggccggggaacaggctaccttc
gaaaccggggtgcacggtttgcatcccgagctaattacccttttagggcgtttaaaattc
cgtaccagctacgggcaaaatgtcctcaaacactccattgaagtggcccacctggccgga
ctgatggccgctgaactgggtgtggacgcacaaatagccaaacgggccggtttgctgcac
gacatcggcaaggcggtggaccacgaggtagagggtccccacgtatccattggggtggag
ctggccaaaaagtaccgcgagcatcccgaggtgatcagcgccattgcctcccaccatggg
gatcaggaagcccaaactattacggcagtcctggtacaggcggccgatgccatatcggcg
gcccgtccgggagcccggcgggaaaccctggaggcctatatcaagaggctgcagaagctg
gaggagatcgccggctcctttgagggtgtagaaaaatgctatgccatccaggcagggcga
gagatcaggattatggttaagccggataaggtagatgacctgggagccgtccgcctgagc
cgggaaattgccaagaaaattgaaaaagagctggattacccgggtcagatcaaggtgacc
attatacgggaaacccgggtggtggagtacgcaaagtga
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