Desulfofustis limnaeus: DPPLL_38410
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Entry
DPPLL_38410 CDS
T09067
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dlm
Desulfofustis limnaeus
Pathway
dlm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dlm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DPPLL_38410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dlm03400
]
DPPLL_38410 (mfd)
Enzymes [BR:
dlm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DPPLL_38410 (mfd)
DNA repair and recombination proteins [BR:
dlm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DPPLL_38410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
UB2H
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BDD89476
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All DBs
Position
complement(4224479..4228015)
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AA seq
1178 aa
AA seq
DB search
MNENHLSLLSGASLVSGLRGSSPAWFSASRSKQGPLCCILADEQQVSAFEQDLALFTDLP
VFSYPGYETPPYTPLSPDPQTAAARLSTLYRSSGTSARFILVISVEALLRRVIPPALLQQ
RAELLMAGENFDLVTLRNALVAMGYEATSLVRGYGDFSVRGGVLDLFPPPFVLPNGSLHD
GPLRLDFFGDTIESIRPFNPLNQRSVGSIDEAVILPTSDIIFAAETPTQRTALVNRFHQR
SEELQWDSVQTKELIDRLHQGARFAGIEAFLPLFCADGSTTTATVFDYLPTATTLLLIDP
ESVLRQARLVEERIAANYANARQNGTPALPPRELFVDTNDLAALGSNFSRIAITDFAPED
QPVVTIPTTGHRLLKQEISLQRKTQGLLGPLAAKIRAWHEDGDRVIICCRSQTRQKMLAE
LLARSSFSLALLPTPFNLERLDADAGASTLFLCDGPLQEGFSLPEQRCHLLSESELFGEM
RLGSKKRQRRGEAEPFNFTELQEGDIVVHREHGLGFYRGLVTMELQGITNDFMLIEYRDG
DKLYLPVDRLNQVSRYEGLSDKEPKIDRLGAQAWKNTKKKVSDEVWKIAHELLQIYAARE
LRSGRAFSSPGSFYRELEESFPFDETPGQDRAINETLDDLLSDKPMDRLICGDVGYGKTE
VAIRAAFKVVEDGLQVAVLVPTTVLAEQHAKTFTDRLKDFPVRIECLNRFRSRQEQKKIV
ADLAEHRIDIVIGTHRLLSKDVSFARLGLLIVDEEHRFGVTHKERIKKIKAEVDVLTLTA
TPIPRTLQLSLLGIRDLSVISTPPEHRRPIKTFVARYDDLVIKEAVSRELLRGGQVFVVH
NRVKSIHRMAATVQSLVPEARIAVAHGQMPGKELEEIMVAFVNHQIDVLISTTIIESGLD
IPSANTIIINRADRLGLAEIYQLRGRVGRSATQSFAYLLVPSLDQLSKDSRERLRALMEY
NELGGGFKLAMSDLQIRGGGNLLGVSQSGHIAAIGYDLYLDLLQKTVADLKARQHVGEAS
AIQDDLDPEISLRISAYIPEPYMPDISQRYLMYRRIAALSGPNQPPAEELKAELDDRYGR
PPVEVENLFHLVTIKKRLIPLRINKLERGTDNLVFSFLADTPIAAERLFTYIQSRGKRAR
LLPDGRMIVTIPEATAALVQHIIDQTLTDLYQLIHATQ
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaccacttatcacttctttccggcgcctcgctggtttccggtctgcgtggc
tcgagcccggcctggttctccgccagccgcagtaaacaaggccccctttgctgtatcctt
gccgatgaacagcaggtctcagccttcgaacaggacctggcgttatttaccgatctgccg
gtcttctcctatcccggttacgaaacccctccctacacgccgctatcgcccgatccccag
accgccgccgcccgcttgtcgacgctctatcgaagtagtggaaccagcgcccgattcatc
ctggtgatttcggtcgaggccctgctgcgccgggtcatcccgcccgcactgctgcaacag
cgggccgagctgctcatggctggtgaaaatttcgatctggtaacgctgcgtaacgcgctg
gttgccatggggtacgaagcaacctcgctggttcgcggctatggcgatttttcagtccga
gggggggtcctggacctctttcctcccccgttcgtgctaccaaacgggtctctgcatgac
ggaccactgcggttagacttctttggcgataccatagaatcgattcgccctttcaatccc
ttgaaccaacgttcagtcggcagtatcgacgaggcggtcatcctcccgaccagcgatatc
attttcgcagccgagacgcccacgcaacgcacggctctggtgaacaggttccaccagcgt
agcgaagaacttcagtgggattcagtgcagaccaaagaactcatcgaccgattgcaccag
ggcgcacggtttgccggaatcgaggcttttttgccgttgttctgtgccgatggttccacc
actaccgccaccgtcttcgattatctgccgacggctacgacgctcctgttgatcgacccc
gagtccgtcctgcgccaagcacgtttggtggaagaacgaatcgcagccaattacgccaac
gcccgccagaacggtaccccggccctgccgccccgggagctgtttgtcgacaccaacgac
ctggctgccctcggcagcaatttttcacgtatcgcgataaccgacttcgcccccgaagac
cagccggtagtcaccattcccaccaccggccatcgtttgctcaagcaggagatatccctg
caacgtaaaacccaggggttgctcggcccgctggctgcaaaaatacgtgcatggcacgaa
gacggtgaccgggtgatcatctgctgccgctcccagaccagacagaaaatgctggccgaa
ctgttggcgcgctcttccttctcgcttgccctcctgccaacgccttttaatctcgagcgg
ttggatgccgacgctggagcgtcaacgctctttctctgcgacggtccgttgcaggaagga
ttcagtctgccggaacaacgctgccatctgctgtcggagagcgagctgttcggcgagatg
cggctgggcagcaaaaaacggcaacgacgcggcgaggcggaaccgttcaattttaccgag
ctgcaggaaggcgacatcgtcgtccaccgggaacacggtctcgggttttatcggggcctg
gtgaccatggaattgcaaggaataaccaacgatttcatgttgatcgagtaccgggacggt
gacaaactctacctccctgtcgatcggcttaaccaggtcagccgctacgaggggctgtcc
gacaaggaaccgaagattgatcggctcggcgctcaagcttggaagaacaccaagaaaaag
gtctcggatgaggtttggaaaatagcccacgagttgctgcagatctacgctgcccgagaa
ctgcgaagtggccgggcgttctcttctcccggcagtttctatcgggagttggaggaatcc
ttcccctttgacgaaacccccggccaggatcgagccatcaatgagacgctcgacgacctt
ctctcagacaaaccgatggatcgactgatctgcggtgatgtcgggtacggtaagacggaa
gtggccatccgggcggcattcaaagtcgtagaggacggtttgcaggtggcggtcctggta
ccaaccaccgtcctggccgaacagcatgccaagacttttaccgatcgcctcaaggacttc
ccggtacgaatcgagtgcctcaatcgtttccgctcacgccaggaacagaagaagatcgtg
gccgacctggccgagcaccgaatcgacatcgtcatcggcacccatcggctgctgtccaaa
gatgtgtcattcgcccgacttggcctgctcatcgtcgatgaagaacaccggttcggcgtg
acgcacaaggagcggatcaaaaagatcaaggccgaggtggacgtcctcaccctgacggca
accccgatcccgcgcaccctgcaattatccctgctgggaatccgcgatctctcggtcatc
tccacaccgcccgagcatcgccgaccgatcaagacctttgtcgcccgttacgacgatctg
gtcattaaagaggcggtgagccgggagctgctgcgcggcgggcaggtcttcgtggtccat
aatcgggtcaagtcgatacaccgcatggccgccaccgtccagagcctggtccccgaagcc
agaatcgccgtggcccacggacagatgccgggcaaggagttggaagaaatcatggtggcc
ttcgtcaaccaccagatcgacgtgttgatcagcaccaccatcattgaatccggcctcgac
atccccagcgcaaacaccatcatcatcaaccgtgccgatcgcctcggtttagccgagatc
taccaattgcgcggccgcgtcggacgttcggcgacccaatcctttgcctacctgctggta
ccgtcactcgaccagctgtccaaagactcccgagaacggctgcgggcgttgatggaatac
aacgagttgggcggtggtttcaaactggccatgtccgacctgcagatccgcggcggcggc
aacctgctcggtgtttcgcagagcggtcatatcgccgccattggctatgatctgtacctg
gatttactgcaaaaaacggtggcggacctgaaggcccggcaacacgtcggcgaggcatcg
gccatccaggacgacctggacccggaaatcagcctccgtatttcggcctacatcccggag
ccgtacatgccggacatcagccagcgttacctgatgtaccgacggatagccgccttgagc
ggccccaaccaaccaccggcagaggagctcaaggcggaacttgacgaccgttacggccgc
ccccccgtcgaggtggagaacttgtttcatctcgtcaccatcaagaagcgattgattccc
ctgcgcatcaacaagctagaacgaggtaccgacaacctggtcttttccttccttgccgac
acccccattgccgctgaacgattgttcacctacattcagagtcgcggcaaacgagcgcga
ctgctacccgatggccgaatgatcgtcacgatcccagaggcgacggcggcactcgtgcag
cacataatcgaccaaacacttaccgatctgtatcagctgatccatgccacacagtaa
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