Dietzia lutea: A6035_13145
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Entry
A6035_13145 CDS
T05442
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dlu
Dietzia lutea
Pathway
dlu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A6035_13145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dlu03400
]
A6035_13145
Enzymes [BR:
dlu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A6035_13145
DNA repair and recombination proteins [BR:
dlu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A6035_13145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
DUF72
Motif
Other DBs
NCBI-ProteinID:
AWH92962
UniProt:
A0A2S1R9M4
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All DBs
Position
2902397..2905117
Genome browser
AA seq
906 aa
AA seq
DB search
MATKGQKESVKVDGRTVRFTHPDKVLYEATGTTKADVLEYYTAVAPLLMTYAGNRPVTRK
RWPDGTDADSFFEKNLPQHAPDWVPSVTIEHSSRTVRYPVLDSPATLAWFAQQAALELHV
PQWTLTNGEPGRTRRIVIDLDPGEGVELDTTAKVALRVRDLLSEAGLESFPVTSGSKGIH
LYARLDKAVTAASASKVAKEIAQSLAKQTPDLVTATMKRSIRDGKVFVDWSQNSGAKTTV
APYSLRGRAEPWVAAPRSWEELGDGGLTHLHWDDVLKRLDSDGDLLDGLEGTAKKGGSAK
KKPATKAPAKKTPAEKKASSSGSASRAKKSSGGKKSSSSSDDEDPDRADTDADDTDGSTG
DTDSDGADTRAAEAEGCDASPTSEDAVVTSLAEYRRKRDRRRTPEPFEDEVETDRSEGDG
PIFVIQEHHARRLHYDLRLEHHGVLASWAVPKNLPTEPKDRRLAVNTEDHPLGYETFEGT
IPKGEYGAGHMTIWDRGTYECEKWREDEIIVWLDGDKVSGRYVLVRTSAEKNQWIVQYMK
DQSPDSFYGGRDNPKSRYPEGDKSASRSGGSGSGGSGRASRSDDSDRSDSAARPDTPPLP
MIPTAAEVTGLPDDTWAFEGKWDGYRVTVATNGEQTRLVSRNGNSMDWLADGFPGLAETL
EKPAVIDAELVILDSNGVPDFASLAKQAAAEGKDSSLPPVELFVFDVLEVDGVDLQSQPW
ERRREVLDLLAPALTEVERVHVPDVLDGPGDRALAEAEEYGWEGIVAKRRDSKYESGRRS
KAWLKQKLLTTTEAVVGGWRPGKGGRSGSLGSLLLGVPAETGLAYIGRVGTGFTDKQARA
LLDELEPLRRKTSPFVEQLPADARRDAIWVLPKIVVEVRHQGFTDDGNLRQPSWRDIRRD
KLPGDL
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaaggggcagaaggagtcggtgaaggtcgacgggcggaccgtgcggttcacc
caccccgacaaggtgctctacgaggccaccggcaccaccaaggccgacgtgctggagtac
tacacggccgtcgcgccgctgctcatgacctacgccggcaaccggcccgtcacccgcaag
cgctggcccgacggcactgacgccgactccttcttcgagaagaacctgccccagcacgcg
cccgactgggtgccgagcgtgaccatcgagcactcctcgcgcaccgtccgttacccggtg
ctcgactcccccgcgaccctggcctggttcgcccagcaggccgccctcgagctgcacgtg
ccgcagtggactctcacgaacggtgagccggggaggacgcggcggatcgtcatcgacctc
gatccgggtgagggcgtggaactggatacgacggcgaaggtcgccctgcgcgtccgagat
ttgctgtccgaggcgggactcgagtcgttcccggtcaccagtggctccaaggggatccac
ctctacgcccggctggacaaggccgtcaccgccgccagcgcctccaaggtggccaaggag
atcgcgcagtccctcgccaagcagaccccggacctggtcaccgccaccatgaagcgctcc
atccgcgacggcaaggtgttcgtcgactggagccagaacagcggcgccaagaccaccgtc
gcgccgtactccctacgcgggcgggccgagccgtgggtggccgcgccccgctcgtgggag
gaactcggcgacggcggcctgacgcacctgcactgggacgacgtcctcaagcgactggac
tccgacggcgacctcctcgacggcctcgagggcacggccaagaagggcggctccgccaag
aagaagcccgccacgaaggcccccgccaagaagaccccggccgagaagaaggcgtcctcg
tccggctcggcgtcgcgggccaagaagtcgtccgggggcaagaagagctcgtcgtcgtcg
gatgacgaggaccccgaccgcgcggacaccgacgctgacgacaccgacggctccaccggc
gacaccgactcggacggcgcggacacccgcgccgccgaggccgagggctgcgacgcctcc
cccaccagcgaggacgcggtggtcacgagcctggcggagtaccggcgcaagcgggatcgc
cgtcgcacgcccgagccgttcgaggacgaggtcgagaccgatcgctcagagggcgacggg
cccatcttcgtgatccaggaacaccacgcgcgccgcctgcactacgatctgcggctcgaa
caccacggggtcctggcctcgtgggccgtgcccaagaacctgcccaccgagcccaaggac
cgccggctcgcggtgaacaccgaggaccacccgctcggttacgagacgttcgagggcacc
atccccaagggcgagtacggcgccggccacatgaccatctgggaccgcggcacctacgag
tgcgagaagtggcgcgaggacgagatcatcgtgtggctcgacggcgacaaggtctccggc
cggtacgtcctcgtccgcacgagcgccgagaagaaccagtggatcgtgcagtacatgaag
gaccagtcgcccgactccttctacggcggccgcgacaacccgaagtcgcggtatcccgaa
ggcgacaagtccgcgtcgcgctccggcggcagcggctccggaggttccggccgcgcgtcc
cgctccgacgactccgaccgatccgacagcgccgcccgccccgacacgcccccgctcccc
atgatccccacggccgccgaggtcaccgggctgcccgacgacacgtgggcgttcgagggc
aagtgggacggttaccgcgtgaccgtggcgaccaacggcgagcagacccgcctggtcagc
cgcaacggcaactccatggactggctcgccgacggcttccccggactggccgagacactc
gagaagcccgccgtgatcgacgcggagctcgtcatcctcgactccaacggcgtgcccgac
ttcgcctcgctggccaagcaggccgccgccgagggcaaggactcgtctcttccgccggtc
gagctgttcgtctttgacgtgctcgaggtcgacggcgtggatctgcagtcgcagccgtgg
gagcgtcgccgcgaggtgctggacctgctcgccccggcgttgaccgaggtcgagcgtgtg
cacgtgcccgacgtcctcgacgggcccggcgaccgcgccctggccgaggccgaggagtac
ggctgggagggcatcgtcgccaagcgtcgcgactcgaagtacgagtcaggccggcggtcg
aaggcgtggctcaagcagaagctgctcaccaccaccgaggcggtcgtcggcggctggcgg
cccggcaagggcggacgctccggctcgctgggctccctgctgctgggcgtgcccgccgag
acggggctggcctacatcgggcgcgtcggcaccgggttcaccgacaagcaggcgcgcgcc
ctgctcgacgagctcgagcccctgcgccggaagaccagccccttcgtggagcagctgccc
gctgacgcccgccgcgatgccatctgggtcctacccaagatcgtcgtggaggtccgccac
cagggcttcaccgacgacggcaacttgcgccaaccctcctggcgcgacatccgccgcgac
aagctgccaggggacttgtag
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