KEGG   Dactylosporangium matsuzakiense: Dmats_03035
Entry
Dmats_03035       CDS       T08700                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dmat  Dactylosporangium matsuzakiense
Pathway
dmat03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dmat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Dmats_03035 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dmat03400]
    Dmats_03035 (ligD)
Enzymes [BR:dmat01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Dmats_03035 (ligD)
DNA repair and recombination proteins [BR:dmat03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Dmats_03035 (ligD)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase
Other DBs
NCBI-ProteinID: UWZ49310
LinkDB
Position
672981..673889
AA seq 302 aa
MLASPGMLPSGPGWVYEFKWDGIRAIAVVKDGATRLFARSGAEVTAAYPELAGVGRGLAD
SVLDGEVVAMDTAGQPSFQVLAERMHVREPLRAARLAATVPVTYLVFDVLRAEGDELLTL
PYRRRRERLERLALGPRAMVPPSFDDGPATVAASVENKLEGVVAKRADSQYHPGIRTSDW
IKVKLEESAEFLVGGWRPGKRALGALLVGVPAPGGLAYRGRVGGGISGAAERSLLAALEP
LAARQNPFGSSVPREDARGAVWVTPHLVVEVKFSHRTRDGRLRFPRFLRIRPDLTAEEVR
DA
NT seq 909 nt   +upstreamnt  +downstreamnt
atgctcgcgtcgcccggaatgctgccctccggacccggctgggtatacgagttcaagtgg
gacggcattcgcgcgatcgcggtcgtcaaagacggcgcgacaaggctcttcgcccgcagc
ggggccgaggtgacggccgcctatcccgagctggccggagtcggtcgagggctggccgac
tcggtgctcgacggcgaggtcgtggccatggacacggccgggcagccgtcgttccaggtg
ctggccgagcggatgcacgtgcgtgagccactgcgggcggcccggctggcggcgacggtg
ccggtgacgtacctcgtcttcgacgtactgcgggcggagggtgacgagctgctgacgctg
ccgtaccgccgccgccgcgagcgcctcgagcgcctggcgctggggccccgcgcgatggtg
ccgccgtccttcgacgacgggccggcgacagtcgcggcgagcgtcgagaacaagctcgag
ggcgttgtggcgaagcgggcggattcgcagtaccacccggggatccgcacgtccgactgg
ataaaggtcaagctcgaggagagcgcggagttcctggtcggcggctggcggccgggcaag
cgcgcgctcggagcgctgctggtcggggtgccggcgccgggcgggctcgcctatcgcggc
cgggtcggcggcggtatctccggcgcggccgagcggtcgctgctggcggcgctcgagccg
ttggcggcccggcagaacccgttcggctcgtcggtaccgcgagaagacgcccggggagcc
gtctgggtcaccccgcacctcgtcgtggaagtgaagttcagccaccggacgcgcgacggc
cggctgcgtttcccgcggttcctgcgcatccgcccggacctgaccgccgaggaggtccgc
gatgcctga

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