Drosophila melanogaster (fruit fly): Dmel_CG10228
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Entry
Dmel_CG10228 CDS
T00030
Symbol
Pcf11
Name
(RefSeq) Pcf11 cleavage and polyadenylation factor subunit, isoform B
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Dmel_CG10228 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dme03021
]
Dmel_CG10228 (Pcf11)
03019 Messenger RNA biogenesis [BR:
dme03019
]
Dmel_CG10228 (Pcf11)
Transcription machinery [BR:
dme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Dmel_CG10228 (Pcf11)
Messenger RNA biogenesis [BR:
dme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Dmel_CG10228 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
Siah-Interact_N
SOG2
Motif
Other DBs
NCBI-GeneID:
36658
NCBI-ProteinID:
NP_001163153
FlyBase:
FBgn0264962
UniProt:
E1JH68
LinkDB
All DBs
Position
2R
Genome browser
AA seq
573 aa
AA seq
DB search
MEQLFQNYRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYAHIIVKVVEYYIS
QVAPEFKLPILYLIDSIVKNVKSSYVQLFGQCIVNIFLHAFESVQHSQSQVLEKVRERMY
ALRQTWNEVFPPSKMYALDVKVKRLDNNWPITAKQPTNKIHVNPAIHVNPDFLKPGLVPG
MPGNPTITSDMEEILQAKTRELLELKKRKLELELEQTKKHLEEQERQLTQTTDAMVGAPI
IMPAPTPAAICPPITDPGIAVHNQRAPGVMGNVGPVMHNMPVAPQLFANKPKVHPVNPAL
LNSVRQRDPRLARQMHAASSHPAAPARNDPRLEAKSSSSQKSSRSRSKSPVRNSSSRSGK
SGSSSHSSSSSRKRSESKSSTTSSSSSSSDVRHKGVTASSSNQPTVKRSGKITSKDSDRY
VRNGSPLGSAKRKSSSPSSSPSKSKRSTSHKSSSSRGKTSSLRSRSRSPVFMDVDLRTGV
RSKSPESRAVAPSSLPLAGASLPASAKAPKDLEKRKKQLLILISHLLANNQVWFDLEPRA
TDSLVENLEYINQNGGTRWLRLVEGRVIGTVCG
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctatttcagaattaccgcgacgatgagcgaaggatcggcgaggagtatctg
tcaagtctccaggacctcaactgcaacagcaagccattgatcaatatgctcacgatgctt
gccgaggagaacatcaactacgcccacatcatagttaaagtggtggaatattacatcagc
caggtggcgcccgaatttaaattgcccatactatatttaattgattcgatagtaaagaat
gtgaaaagcagctacgtccaattgtttggacagtgcatagtcaacatattcctccacgcc
ttcgaatcggtccagcactcacagtcgcaggttttggaaaaggtgcgggaacgcatgtat
gccctgcgtcagacctggaacgaggtgttcccgccatccaagatgtacgcgctggacgtt
aaggtgaagcgcctagataacaactggcccattactgccaaacagccaactaacaaaatt
cacgtcaatccggccattcatgttaatccggatttcttaaaaccgggtttggttcctggg
atgcctggtaaccccacaatcaccagcgacatggaggagattttgcaagcaaaaactcgt
gagttgctggagctcaagaagcgcaaactggaactggagctggagcaaaccaaaaagcat
ttagaggagcaggagcgtcagctgacccaaaccacggacgcgatggttggagcaccgatt
attatgcctgctcccactccagcagcaatttgtccgccaatcacggatcccggtatagca
gtgcataatcaacgagctccaggagtaatgggcaatgttggtcccgtaatgcataacatg
ccagtggctccgcagctttttgcgaataaaccaaaagtccatcctgtcaatccggcactg
ttgaactcggtgcgccaacgagatccgagactagcccgccagatgcatgcggcatcctca
catccagctgcgccggcacgaaacgatcctcggctggaggccaaatctagctcctcacag
aagtctagtcggtcgcgcagcaaatcgcctgtgcgcaacagcagcagtcggtctggaaag
agtggaagctctagccacagcagttcgtcgagccgcaagcgaagtgagtcaaagagctcc
acgacttcctcatcttcgtcgagctctgatgttcggcacaagggtgtcactgcaagcagc
tccaaccagccaacagttaagcggtccggtaagatcacgtctaaggattcggatcgctat
gttcgcaatggatctcctttgggatccgcgaaacgcaagagcagctcaccaagtagctcg
ccctccaaatccaagcgcagcacgtcgcacaagtcatcctcgtcgcgaggaaagacctct
tctctgcgttcccgcagtcgatctccagtttttatggacgtcgacctacgcaccggagtt
cgaagcaagtcaccagagagcagggcagttgccccatcatccttaccactggcgggcgca
tcactaccagcatcagctaaagcaccaaaagatttagagaaacgtaagaaacaactttta
attctaatctcacacttgttagcgaacaaccaagtctggtttgacttggaacctagagct
acagacagcttagttgaaaatttagaatatatcaaccagaatggcggcactcgatggctt
aggttggtggaagggcgggttattgggaccgtatgtggttga
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