Desulfosporosinus meridiei: Desmer_2946
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Entry
Desmer_2946 CDS
T02207
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module, ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dmi
Desulfosporosinus meridiei
Pathway
dmi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desmer_2946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmi03400
]
Desmer_2946
Enzymes [BR:
dmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desmer_2946
DNA repair and recombination proteins [BR:
dmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desmer_2946
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AFQ44835
UniProt:
J7IT26
LinkDB
All DBs
Position
complement(3064274..3066730)
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AA seq
818 aa
AA seq
DB search
MTEKLDEYNQKRNFTRTSEPEGITEVAQEGLRYVVQHHLARRDHYDFRLEWEGALLSWAV
PKGPSYDTRDKRLAIKVEEHPLEYRNFEGTIPRGEYGGGVVMLWDEGYWEPSGDVAEGLS
AGMLKFVLKGRRLKGKWALVRLKGKAGEKQDNWLLLKEKDEYANNAQGISEFTTSIRTGR
TMTEIEEGEEEKITKNPFSSTGVQLAQLVHTPPKGEDWLYELKYDGYRILAYIESNSVRL
ITRNGHDYTKRFQDVASSLTEWAVGRAIILDGEMAITDPAGKTDFQALQNYLKNPQGKNL
TYIVFDLLALDGTDLRGQRLIDRKERLADLMQDAPENLHYSRHVRGNGKESFRAACEGDM
EGIIGKKADSFYSGARNGDWIKLKCDKRQEFVIGGYTLSDKKTSGISSLLLGVYARGELV
YAGRAGTGLSEADIKKLEGEFAGLQRGESPFQCAPKPRSNERITWLEPELVAEIKFAEWT
ADHQLRQGSFKGLRRDKNPKDIRQETADEDREDNETLSPSAVKKTESLVEANTNGIIIEG
IKISNPDKVIFADSEITKLDVIRYYAQVAERMLPYVSHRILSIVRCPKGIAQACFYKKHP
VPGSKGIVTIPISTGSGEQEDYFYIEAPTGLIAEAQMGTLEFHIWGSRVEHLEEPDLMVF
DLDPDEGMDLSRVRQGVRDVKNILAELSLKSYLKTSGGKGYHVVVPLKPAVTWERFHDFA
RRVAEVMEQKWPDRYTSNVRKAKRTNKIFIDWIRNGRGATSIAPYSLRARNGAGVSMPIP
WAELDTVAPDDVNMAEALRRIGGSDPWQDFFRNNQQLK
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaaactcgacgagtacaatcaaaaaagaaatttcaccagaacctcagaaccg
gaagggataacagaagttgcccaagagggtctgaggtatgtggttcagcaccatttggct
cgcagagatcactacgacttccgcctggaatgggagggagctttattgagctgggcagtg
cccaagggcccttcctatgatactcgtgacaagaggctggccataaaggtggaggagcat
cctttggaatacagaaactttgaggggacgattccccgaggggaatatggcggcggtgtg
gttatgctctgggatgaagggtactgggaaccctctggtgatgtagctgaaggactcagt
gccggaatgctgaagtttgttctgaaaggacgcaggcttaagggcaagtgggctctggtg
cgcttgaaagggaaagcgggggagaagcaggataactggctgttgcttaaagaaaaagat
gagtatgctaataatgcccaggggatttccgaatttaccaccagcatcagaaccggacgc
accatgacggaaattgaagaaggggaagaggaaaaaattacgaagaaccccttcagcagt
accggtgtacagttggcccaattagttcatacgcctcctaagggtgaggattggctttat
gagttgaaatacgatggctacagaatactggcctatattgaaagcaacagtgtccggttg
attaccaggaacggccatgattatacaaagagattccaggatgtcgcctcttcccttact
gaatgggcggtgggccgggcgataattctggacggcgaaatggccatcacggatccagca
ggcaagacggactttcaggccctgcagaactatctgaaaaatccccagggcaaaaacctg
acctatatcgtctttgacctcctggccctggatggaacagacctcaggggccagcgcctg
attgataggaaggaaagattggcagacttgatgcaggatgcccctgaaaatctccactac
agccggcatgtaagaggaaatggcaaagagagttttcgggcggcctgtgaaggggatatg
gaagggataatcggtaaaaaagccgattccttctatagcggagcaagaaacggggactgg
atcaagcttaaatgcgataaaaggcaggaatttgtgatcggagggtataccctttctgac
aaaaaaaccagcggaataagttccttgctcctaggcgtttatgcaaggggggaattagtc
tatgccggccgggccggcactggcttgagcgaagcggatataaaaaagctggagggcgaa
tttgctggcctacagagaggagagtcccctttccagtgtgcgcccaagccccgatccaat
gaaaggatcacctggctggaacctgaattggtggcggaaatcaaatttgccgaatggacc
gcagatcatcagttaagacagggcagcttcaaaggtctgcggagggataagaatcctaag
gatattagacaagaaacagcggatgaagatagagaggataacgaaacactgtctccatca
gctgttaaaaaaacggagagccttgtggaagcaaacaccaacgggatcatcatcgaagga
atcaagatttctaacccggacaaagtgatctttgccgactcggaaatcaccaaactggat
gtgatccggtattacgctcaggtggcagagcgtatgctgccctatgtgagccataggatt
ctcagcattgtccgctgtcccaaaggcatagcccaggcttgcttttataagaagcatccc
gttccgggaagcaaaggaattgtcactatccctatttctaccggcagcggagaacaagaa
gactacttttatattgaggcccccaccgggctgatcgctgaagcacaaatgggcaccctg
gaatttcatatctgggggagccgtgtggagcatctggaagaacctgacctgatggtattt
gatctggatcctgacgaaggaatggatctgagcagagtgcgtcaaggtgtgcgggatgtg
aaaaatattctggccgagctttccctaaaatcttacctcaagaccagtggcggcaaaggg
taccatgtagtcgtccccttaaaaccggccgtgacttgggagaggtttcacgattttgcc
aggcgcgttgccgaagtgatggaacagaagtggcctgatcgttatactagcaatgtgaga
aaggctaagcgtaccaacaagatcttcatcgactggattcgcaacggcagaggtgctacc
agcatagccccctattccctgagagctaggaacggagccggagtgtccatgcctatcccc
tgggctgaactggacacggtggctcctgacgatgtcaatatggcggaggccctccggagg
attggcggcagtgatccttggcaggatttttttcggaataatcagcagcttaaatga
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