Daphnia magna (water flea): 116916925
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Entry
116916925 CDS
T07514
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03013
Nucleocytoplasmic transport
dmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116916925
03015 mRNA surveillance pathway
116916925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116916925
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116916925
5.6.2.5 RNA 5'-3' helicase
116916925
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116916925
mRNA cycle factors
Common to processing body (P body) and stress granule
116916925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
ATPase
SLFN-g3_helicase
AAA_16
nSTAND3
DEAD
Helicase_RecD
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
116916925
NCBI-ProteinID:
XP_032778121
LinkDB
All DBs
Position
LG2:complement(16006637..16011660)
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AA seq
1129 aa
AA seq
DB search
MSVDTFGPNSQTLTFLDTEENDLLGADTQGTDFDFRDFTLPSQTQASQIDHASLHKSMGK
HQANGLESIDSQLASAMKNLNDLQFEEEDEEGYYSKDLPPHACKYCGIHDPGCVVMCNIC
KKWFCNGKGNTSGSHIVNHLVRAKHKEVTLHRDGPLGETVLECYSCGVRNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDIEQWKPLIADRCFLSWLVRSPSEAEQMRARQLTAQ
QLNRLEEMWKEKPEASFEDLERPGVDEEPQHVLLRYEDGYQYQNIFGPLVKLEADYDRRV
KEAQTQDNVHVRWDVGLNKKTVAYFSLQKTDSDMKLMHGDELRLRYLGELHKPWTGLGHV
IKLPDNYGEEVGIELKNSNGAPTECSTNFVVDFVWKSTSFDRMQSALRKFAVDESSVSAY
IYHRLLGHEVEDVVFRLHLPKHFSAPDLPELNRSQVFAVKQAVQRPLTLIQGPPGTGKTV
TSATIVYHLAKLGSGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDSPVSFLA
LHNQVRCLEGASELRKLVQLKEEVGELSQGDEKRYRMLKRQAERELLEAADVLACTCVGA
GDVRLARIKFASILIDESMQATEPECMVPVVLGARQLILVGDHCQLGPVVMCKPAAKAGL
SQSLFERLVVLGIRPFRLEVQYRMHPRLSEFPSNFFYEGSLQNGVCAEDRILRGVDFPWP
MPDRPMFFYVTLGQEEIAGSGTSYLNRTEASNVEKIATRFLRSGVKPEQIGIITPYEGQR
AYLVQYMQHQGSLHAKLYQDIEIASVDAFQGREKDIIIMSCVRSNENQGIGFLNDPRRLN
VAMTRARYGIIIVGNPKVLAKQPVWNHLLHFYKENHVLTEGALNNLKESMMQFPKPKKPI
NSFNPGQHFMSTAVYDARQAMVPGSVYDRSGGGQPPNNNGISTYIPRATANVGDPYSRLH
DPIGYIAPERAQAALSAMPVPLGVFMNMTHVPPRFHGQQPQGLHSNSKPNQRPKESARAS
GPRAGKVSSKGGSSLFTQSLSQNTQDVSTQPFSQGGMALTQGMSQGMSQTVSGFGALSQS
GLSQLDPSQDPYLSSDYQSQMDGLLSQDSTYQGGRSAFFRHGSQFTQPY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacacttttggacccaattcgcaaacgctcactttccttgacactgaggaa
aatgatcttcttggggcagacactcagggaaccgatttcgactttcgcgattttaccttg
ccgagtcagacccaggcttcacaaattgatcatgctagccttcacaaatcaatgggaaag
caccaggctaatgggttggagtcgattgattcccagcttgcttccgcgatgaaaaatttg
aatgatctacaatttgaagaagaggatgaagaaggctattacagcaaagatttgccacca
catgcttgcaagtattgtggtattcacgatcctggttgtgttgtgatgtgcaacatttgt
aagaaatggttctgcaacggcaaaggaaatacttctggttcccatattgttaaccatctg
gtccgagcaaaacataaggaggttactctacaccgagatggacctttgggtgaaacagtt
ctggaatgttattcctgtggagtcagaaatgttttcgtcttgggctttataccagctaag
gctgattcagttgttgtgctgctctgtcgccaaccttgtgctgctcagtcatcactaaaa
gatatgaactgggacattgaacaatggaaacctcttatagccgaccgttgtttcctcagt
tggcttgtccgaagcccttcagaggctgaacagatgagagctcgtcaattgacggcccag
cagttgaaccgtttagaagaaatgtggaaagagaaacctgaagctagctttgaagacctt
gaacgtcctggtgttgacgaagaaccgcaacatgtgttgcttcgatacgaggatggctac
caatatcagaatatatttggcccgctagtgaaacttgaagctgactacgatcgacgagtc
aaagaagcccaaacccaagataacgttcacgttcgttgggatgttggtctcaataaaaag
acggttgcttactttagtcttcaaaagacagacagtgatatgaaactgatgcatggtgac
gagctcagattgcgttaccttggagaattacacaaaccatggactggtttaggccacgtg
ataaaactccctgacaactatggcgaagaagtcggaattgaattaaagaattcaaacgga
gctccgacagaatgttctactaattttgttgtagattttgtctggaagtccacgtcgttt
gataggatgcaatcagctttgaggaaatttgcagttgatgaaagcagtgtatcagcttac
atttatcatcgtttgctcggccacgaggttgaagatgtcgtcttccgccttcatcttccc
aaacatttttcggctcctgacctgcctgagcttaatcgatctcaggtttttgccgtgaaa
caagcagttcaacgcccattaacattaattcaaggacctcctggcactggaaagacggtt
acatcggccaccatcgtgtaccatttggccaaattaggttcgggaccagtattagtttgc
gcgccgtcaaatatcgctgtagatcaactgaccgaaaaaattcatagaactggtttaaaa
gtggtccgtttgtgcgccaaatcgagagaggctattgattcacccgtatcgttcttggcc
ttacataatcaagtgcggtgcctcgaaggggcttccgaattacggaagttggttcagcta
aaagaagaagtcggtgaactgtcacaaggagatgaaaagcgataccgtatgctgaagcgg
caagcagaacgagagctacttgaggcagcggatgttttggcttgcacctgcgttggtgct
ggtgatgttcgcctggcccgaataaaatttgcttctatcttgattgacgaatctatgcaa
gccaccgaacctgaatgcatggttcctgttgttctgggggctagacagctcattcttgtt
ggggatcattgtcagttgggaccagttgtgatgtgtaaaccagctgctaaagctggtctc
tcgcaatcacttttcgaacgattagtagtgcttggcatccgaccctttcggttggaagtg
cagtaccgtatgcatccacggctatctgagtttccatcgaatttcttttatgagggctca
ctgcagaacggtgtttgcgctgaggatcgaattcttcgcggtgtagatttcccctggcca
atgccagacagacccatgttcttctacgtcacgttgggccaggaagaaattgctggctcc
ggcacgtcgtatttgaatagaacagaagcatcaaatgtggagaaaatagccacacgcttt
ctccgttccggagtcaagccagaacaaattggcatcatcacaccctatgaaggtcaaaga
gcttatcttgttcaatatatgcaacaccaaggatcactccatgcgaaattatatcaagat
atcgaaattgctagcgtagatgcctttcagggtcgagaaaaggacattattatcatgtcg
tgtgttcgctccaacgaaaatcaagggatcggttttctcaatgatcctcgtcgtttgaac
gttgctatgactcgtgcacgttatggaatcattattgttggcaatccaaaagttttggcc
aagcaacctgtatggaatcacctgcttcatttttacaaggaaaatcatgtgctcacagag
ggagctctcaacaacctgaaagaatcgatgatgcagtttcccaagccaaagaaacctatt
aacagttttaaccctggtcaacactttatgtctacggccgtttacgacgcacgtcaggct
atggtacctggttccgtctacgatcgatcgggtggaggtcaaccaccgaacaacaacggt
ataagcacctatatacctcgagcgacagccaatgttggagatccttacagccgtctacat
gatccaattggctacattgctcccgagagggcacaggccgccctctctgcaatgcccgtt
ccgctaggcgtctttatgaatatgacacacgtccctcctagattccatggtcagcaacca
caaggattgcatagtaattcgaagcctaatcaaaggccaaaagaaagtgcccgtgcaagt
ggacctcgcgctggaaaagtttcaagcaaagggggttcttcgttgttcacacaatcgctt
tcgcagaatacccaggatgtttctactcagccttttagccagggaggcatggcgttgacc
caaggaatgtcccagggtatgtcgcagacagtttcgggtttcggcgccctatcgcagtcg
ggtctatctcagttagatccttcacaagacccatacctgtcgtcagattatcagtcacaa
atggatgggttgctctcccaagattcgacgtaccaaggagggcgttcggcgttcttccgc
catggctcccaattcacgcagccatactga
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integrated database retrieval system
