Daphnia magna (water flea): 116917517
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Entry
116917517 CDS
T07514
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71 isoform X1
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116917517
04121 Ubiquitin system [BR:
dmk04121
]
116917517
Enzymes [BR:
dmk01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116917517
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116917517
Ubiquitin system [BR:
dmk04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116917517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_2
zf-C3HC4_4
Invasin_D3
DUF3583
Motif
Other DBs
NCBI-GeneID:
116917517
NCBI-ProteinID:
XP_032778917
LinkDB
All DBs
Position
LG1:complement(12743179..12748359)
Genome browser
AA seq
844 aa
AA seq
DB search
MQRTKAYFSPLLLSATPAASPGDLLGGVMVSSSSPSPPDAALLLGPDFHGRNANRIDQRR
MASVFPDPDAPTETQHCPICLNRYDDPRVLPCFHTYCRRCLDAHVAGRLRFPCPSCREEV
YLGEGGTIDTLPTNSFIGDILKVVSDVPEYDSPSVLDQRVSGGSGSGGYETAVGVAAKMV
PSRAYICSNCDEGAVASSRCRDCNEVLCDSCVRAHQRVRLTKDHYIVRFTEDLSKTVGLP
VGLSLFSSPSFSYCDIHPAEVLRLFCDMCSVAICSECTLRDHRGHSFIYLKDAVENSKTI
SLKLLADAKAGMRAVEESMEMTSKMAERIELRAQAIATEIRTATRRHMAALEERERELLQ
RVEKIRQVKGKSLHLQLDELRMALLRLGSTAELLKTALESGSDVEILHTKDKALIEFQHL
RQIRSSLQPQEDDIIQFNPPDGALLQAICSLGLISSSGFGPTSVAFGDGIKRALCNHVAC
MTVHVKDHQGDPRLVGGDPIVAIVEGPNGVSYRADVEDRQNGTYVMTYRPQVEGRHIITV
LIRGRHIHGSPFTVKVRSGRDYSTVGQPLLAFGKEGESEGDLCRPWGVACDKDGYIIIAD
RSNNRVQIFNSAGVFHHRFGSPGTRPGQFDRPAGVASDHLGRIIVADKDNHRIQVFTFDG
TFLFKFGEKGTKNGQFNYPWDLAVNAEGQILVSDTRNHRIQLFAADGTFINKYGFEGTLW
KHFDSPRGVCFNHEGHIVVTDFNNHRLLVINPDFQSARFLGSEGSGNGQFLRPQGVAVDS
EGHIIVADSRNHRVQIFQPNGNFLTKFGTQGSGPGQMDRPSGVCISPEGYIIIVDFGNNR
VQIF
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgtaccaaggcctactttagtccccttcttctttctgctacaccagcggcttct
ccaggcgacctcctgggtggagtgatggtgtcttcttcctcaccatctccacccgatgct
gcgctcttgctcgggccagatttccacggacgaaatgctaatcgcattgatcagcgaaga
atggcttccgtcttccccgatccagacgctccaaccgagacacaacattgccccatctgt
ttgaaccgttacgacgatcctcgtgttttaccttgcttccacacttattgccgtcgctgc
ctggatgcccacgttgctggccgtcttcgttttccgtgtccgtcctgccgggaagaagtc
tatttaggcgagggtggaactatcgatactctacctaccaattccttcattggtgatatc
ctcaaagtggtcagcgacgttccagaatatgattcgccttccgtcctggatcagcgtgtc
agtggcggtagcggaagtggtggctacgaaaccgcagtcggagtcgctgctaaaatggtg
cccagccgggcatacatctgctccaattgcgatgaaggagccgtggcatcgtcacgttgc
cgcgattgtaacgaagtgctgtgcgacagctgcgttcgcgcccatcagcgcgtccgtctc
accaaagatcattacatcgtgcgattcacggaagatttatccaaaactgtaggattgccc
gtcggtttgtcgctcttctctagcccgtcattttcctactgtgacatccatcctgctgaa
gtattgcggctcttttgcgacatgtgctcggtggccatttgctccgaatgcacgttgcgt
gaccatcgaggacattcattcatttatctcaaagatgctgtggagaattccaaaacgatt
agcttgaaactgttagcagatgctaaggcgggcatgcgtgccgtcgaagaaagcatggaa
atgactagcaaaatggcggaacgaatcgaattacgtgctcaagctattgccacggaaatc
cgaacggccactcgccgtcatatggccgcactggaagagagggaacgggaactgttgcaa
cgtgtcgagaaaatacgacaagtcaaaggcaaatctcttcatttacaactggacgaatta
cgtatggccttgctacgtctgggatccacggccgaattgctgaaaactgccctcgaatcc
ggttctgatgtcgagattcttcacactaaagacaaagcattaatcgaatttcagcattta
agacaaatacgcagcagtttgcaaccgcaagaagacgacataatccaattcaacccgccc
gatggcgctctactccaggccatttgttccctgggtctcatatccagttccggatttggt
cccacatctgtagcctttggcgacggaatcaaacgcgctctgtgtaaccacgtagcttgc
atgacggtccacgtcaaagatcatcaaggagatccacgtcttgtaggaggtgatcccatc
gttgccatcgtcgaaggaccgaatggggtctcttaccgggccgatgtggaagatcgtcag
aacggcacttacgtcatgacttatcgacctcaagtggagggccggcacatcatcaccgta
ttgattcgaggtcgacacatccacggatcacctttcaccgtcaaagtccgtagtggacga
gattattcgactgttggccagcctttattagcgttcggtaaggagggtgagagcgaaggc
gatttgtgccgtccgtggggtgtggcttgtgataaagatggctacatcattatcgctgat
cgcagtaacaaccgcgttcagattttcaactcggctggagtctttcatcatcgtttcgga
tctcctggaactcgtcctggacaattcgatcggccggctggtgtcgcttctgatcatctt
ggtcgtattatcgtggcagataaggacaaccatcgcattcaagttttcacatttgacggg
actttcttgttcaagtttggcgagaaagggaccaagaacggccagttcaactatccgtgg
gatctcgccgtcaacgctgagggtcagattttagtctcggatacccgaaaccatcgcatc
cagctatttgcagcagatggcacgtttatcaacaagtatggctttgaaggaacactctgg
aaacatttcgattcgccccgtggcgtttgtttcaatcacgaggggcacatagtcgtgaca
gatttcaacaatcaccgattgttagttattaatcccgattttcaatcggcacgatttttg
ggttcggaaggctcgggaaatggccaatttttacgtccgcaaggcgtcgctgtcgactcc
gaaggtcacattatcgttgccgattcgcgtaatcatcgtgttcaaattttccaacccaac
ggcaattttttgaccaaatttgggactcagggatcgggaccgggtcaaatggatcgaccg
agtggcgtctgcatttcacctgagggctacatcatcatcgtagactttggtaacaatcga
gtgcagatcttctaa
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