Daphnia magna (water flea): 116919138
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Entry
116919138 CDS
T07514
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116919138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116919138
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
116919138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
TPR_19
TPR_17
TPR_1
TPR_2
TPR_8
TPR_11
TPR_16
TPR_7
TPR_12
TPR_9
ANAPC3
Coatomer_WDAD
ChAPs
ANAPC8
T7SS_EccA1_N
DUF5717_N
Motif
Other DBs
NCBI-GeneID:
116919138
NCBI-ProteinID:
XP_045027349
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All DBs
Position
LG3:1351388..1356072
Genome browser
AA seq
1354 aa
AA seq
DB search
MEYDVKKALKDAKEFVKNKDYNSALDTCKGILKHEKNNYLSWVLSAVSFQELGQREKALT
AFVKATELQPDQLTAWQGLAAFLEQERNQLVVTTDGGQQSHELSQKLCDVYKKLECFLKS
DPVKHINILKKQCELYKSLGQLENSADRAILLLNKGDKEITKSVAKILSPVLSLLDHPTL
QILGSSLDELFYPEGEKLDKFFIEQKLLVALQLKQYLKAVTVASEILISNPKHVPSLEVI
AHAFVEEKEIDVSLDRVGQIIDALLSENPKSEYGLLAKARWLLLNGKPLEAKQLLEFMNT
KDATRKSRILCEAYQELHQWTKVENICRDGLESTVPIESDQRFWKLMLIKSLMETGGVER
LKEASMILDNIRDEAKTFIMFRLLETTHLLRSNQLEKCKHNLDVLEEEQPIGNMDKVLLI
KAEYLEKTGRDEDAVQLLDLVCESYPQNVEVLLKAAKMLWHSSSNRGKSVAIMLNVIKLN
RDIAEPYLLVGTFYGEQQHNTSSLQRAVRCLEKAFQLDPYDIRTCEKLLELYRLLDDISS
AVKLLEVVVRCNVKNRRWAWLQKGLLHLKMFQKQKHVPEKEKEAGLAITSLQNAMAIDSN
DSSGWEALGEAYIARGSYTAALKAFQRASELNPLSTYSSYQIASIKQIMGENAEAVIAFE
ALLKQTPDYVPALKGLAETVLNQAIDYLTDGFTGRTVDCCTKAFDLLVRASRLNSHLACV
WALLGQVCLLLRNIPKSDFTLLNVPPVLHSDKDLPITKILVMEMGPKFFLSALRLLPDSG
ALWHNLALSYQACWKLDQTAAYKSSALAAIKKAITLEPKDSSHWDLLGLVATEPAIRQHA
FIRALELSPNAPRTAATWTHLGALYMENGDLHLAHECFKQSQNIDPFHVAAWIGQGNIAE
QLSPAEAMDLFRHTATIGSGSPGQCEGSPSYAQWVINTLADPLAKQTAHYRYSIVQMHAV
PVAIDSLVKYVALYPDDSCALNLLGLLYERQGLFRKAEEAFLNGIEHLTLDDSTISRSRM
DKMKANLARLYTYLDRCDEATELYGTLQESELSSACGIALAHFKANRHAESYVTYEAALH
WLASDDEKRSHLLVAMAMAAFRRDFPDAEAANLLLYESSQLQPPSVYGLLALGALGLLTE
DDTLTTAAFQELLPYQTEPRYVADISRLSSYQQSLLGNELQGQREIARNIHMLPNVPELW
TLLASFKASVAVQASHSRPSDGVQVARWAEIAFGARCQSDSAADHVFQTIDMSQVISLIS
LGYLLAGEDTTSLTTAQKAVHCNPHSAASWSVLLAAALPFWSGTGTVNDRIQRLGWLKKL
IEHLRRKCDVTVYSRLTPWLGHYERRLVSLLSQS
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggaatacgacgtgaaaaaagctttaaaggacgcaaaagagtttgttaaaaacaaggac
tacaattcagccttggacacctgtaagggtatattgaaacatgaaaagaataactacttg
tcatgggttttgagtgctgtatcctttcaagaacttggccaaagggaaaaagccttgaca
gcatttgttaaagcaacagagctacaaccagatcaactcactgcctggcaagggctggca
gcatttttggaacaagaaagaaatcaattggtggtcactactgatggtggtcaacagtca
catgagctttcacagaagctatgtgatgtgtacaaaaagcttgaatgctttcttaaaagt
gatcctgtgaagcatataaatatcttgaagaagcaatgtgagctgtacaaatcattagga
cagcttgaaaattctgctgacagagcaatccttcttttgaataaaggagacaaagaaata
accaaatctgtagcaaagatactgtcccctgttttatctcttttggatcatccaacacta
caaattcttggaagttcacttgatgaactattttacccagaaggcgaaaaattagacaaa
ttcttcattgagcaaaagcttttggttgcgctgcaattgaagcagtatttgaaggcggtg
actgtggcttctgaaattcttatttcaaacccaaaacatgttccatccctggaggtcatt
gcccatgcatttgttgaagaaaaagaaattgatgtttcgcttgatcgagttggacaaata
attgatgcattgctctcggagaatccaaaaagcgaatatggtttactagctaaagcacgg
tggttgctcttgaatggaaagccattggaagctaaacaattattggaattcatgaacacc
aaggacgcaacgcgtaaatcacgtattctttgtgaagcgtaccaagaattacatcagtgg
acaaaagtggaaaacatttgccgcgacgggcttgagtctactgttccaatagaatcggat
caacgtttttggaaattaatgctgatcaaaagcttgatggaaaccggtggagttgagcgt
cttaaagaagcgtcgatgatcttggataacattcgggatgaagccaagaccttcattatg
tttagattattggaaactacacatcttttgcgttccaaccaacttgaaaaatgcaaacat
aatctagacgtgttagaagaggaacaaccaatcggcaatatggacaaggtacttctaatc
aaagccgaatatttggaaaaaaccggacgtgatgaggatgctgtacagctactagatctt
gtttgtgaaagctacccacaaaacgtcgaagttttactgaaagcggctaaaatgttatgg
cacagttccagtaaccgcgggaagagcgtcgctataatgctaaacgtcatcaagctgaat
cgagatatcgccgaaccatacctgttagtgggaactttttatggcgagcaacagcacaat
acttcaagcttgcaacgagctgtgcgttgccttgagaaggcattccaattggatccttat
gacataagaacgtgtgaaaagttgctggaactctatcgattgcttgatgatatttcaagt
gctgttaaacttttggaggttgtcgtccgatgtaacgtaaaaaatcgtcgatgggcgtgg
ttgcagaaaggtcttctgcacttaaaaatgttccagaaacagaaacatgtcccggaaaag
gaaaaagaagctggtttggcaattacgagcttacaaaacgcgatggctatcgattccaat
gatagttccggctgggaagccttgggcgaagcctatattgcccgtggctcgtatactgct
gcattgaaagcattccagcgtgcttccgaattgaaccctctatcgacttactcgtcatac
caaatcgcctccatcaaacaaataatgggtgaaaatgcagaggcggtaatcgcatttgaa
gctctgctcaagcaaactccggactatgtgcctgcccttaaaggacttgctgaaacggtt
ctaaatcaggcaattgactacctaacagacggtttcactggcagaacggtggactgctgc
acgaaagcttttgatttactcgtgagagcaagtagactcaattcccacttagcctgtgta
tgggctcttttaggtcaagtctgtttattgcttcgaaatattccgaaatcggatttcacg
ctgctgaacgtcccgccagtgctccattcagacaaagatttgcccatcactaaaatccta
gtgatggagatgggtccaaaattcttcttgtctgcgttgaggttgctgcctgactcaggt
gcgttgtggcataatttggctttatcttatcaagcctgttggaaactcgatcaaactgca
gcctacaagtcttctgcattggcggctattaagaaagccattactttggagcctaaagat
tcttcgcactgggatttacttggtctggttgctactgaaccagctatccggcaacacgct
tttatccgtgcgctggagctaagtcctaacgcaccaaggactgccgccacgtggactcat
cttggagctttgtacatggaaaatggagatcttcacttggctcatgagtgcttcaagcaa
tcacaaaacattgatccgtttcacgtcgccgcgtggattgggcaaggcaatattgctgaa
caattgagcccagccgaagctatggatcttttccgacacacagcaaccatcggcagcggt
agtccaggccagtgcgaaggaagtccatcttacgctcagtgggttataaacacgctagcc
gatcccctggcgaaacagacagcccattatcgctatagtattgtacagatgcacgctgta
cccgtcgccattgatagtctagtcaaatatgtcgctctctatcctgacgacagttgcgct
ctgaatttacttggactgctctacgagcgtcaaggattgttcaggaaagccgaagaagcc
tttttgaacgggattgaacatctaaccttggatgatagcacgattagcagatcccgcatg
gacaagatgaaagctaacttggccagactttacacttatcttgatcgatgtgatgaagcc
accgaactgtacggcacgttgcaggaatcagagctcagttcagcatgtggaattgctctt
gctcatttcaaagccaacagacatgccgagtcttatgttacctatgaagcagccttgcat
tggctggcttcagatgacgagaaacgttctcatttattggtagccatggccatggccgcc
tttcgacgagatttccccgacgccgaagcagcaaatttgcttctttacgaaagctcacaa
ttgcaaccaccctccgtctatggacttttagcacttggagcactcggtctgctaacagaa
gacgataccttaactacagccgctttccaggaattgttaccttatcagacagagccacgc
tatgtagcagacatcagtcggttgtcgtcgtatcagcaatctcttcttggaaacgaactg
caagggcaacgtgaaattgcgcgcaatattcatatgctgcccaacgttcctgagctatgg
acattattggcttcttttaaagcatcagttgcagtccaagcgtctcattctcggccgtct
gatggagtgcaggtggctcgttgggctgagattgcatttggtgctcggtgccagagtgac
tcggccgcagaccatgtttttcaaaccatcgatatgtcgcaagttatttcgctcatcagt
ctgggctatctactagccggagaggatactaccagtctcacgacagcacagaaggctgtt
cactgtaatccgcattcagctgcatcatggtcggtgttgcttgcagctgcccttcctttc
tggagtggaacgggcacggttaatgatcggattcaacggttaggttggctcaagaaattg
atcgaacatttgcgtcgcaaatgcgatgttacggtgtattcccgtctaacgccttggctt
ggccattacgaacgacggttggtctcattattgagccaatcttga
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