Daphnia magna (water flea): 116927708
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Entry
116927708 CDS
T07514
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116927708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116927708
Enzymes [BR:
dmk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116927708
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116927708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
RNA_ligase
BRCT_2
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
116927708
NCBI-ProteinID:
XP_032790634
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Position
LG7:3630331..3634038
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AA seq
899 aa
AA seq
DB search
MLFREFCSACEEICLSKRSEKLDRLKKLLRECRQRILDDPNLTTYSVMRLLLPHLDRSRA
SYGIKEASLAKLYIKIFCLPKDGPDAIRLLTYKVPKTTQTLAKDFADTCYNILRTRCSSD
VSSLSVSEINQYLENLSKTYMSKKLENTEKLLQPLLMKLSALEQKWLIRIILRDVKLTGL
SDKIVLSAYHPDAKELYDVSNDLEKVCITLLNPLSRSSEIEISLFNPFRPMLADRLEMSK
IFAKMGNKPFYVETKIDGERMQIHKSGKRYGYYSRRGFDYTSNFGTNSSSGNLSPRLEEC
FRETVTSCIIDGEMVAWNVKGSFIVSKGENIDVKSISSTGELIPCFVAFDILLLNGEVLS
NLPYKERLKLLESAVKIKESVIQFPNRKLVTTKMEVTNLLNDAIDQREEGIVLKNPDSIY
KPNERKGGWFKVKPEYVNEMMDHLVFQSYATLDLIILGGYHGQGRRRNLIAMFLVGVAVP
SLEKEKEQLEFYSFARVGSGFSDKQLRSLLEKLNPHWQKWDKNAPPPKIHCSREKPDVWI
NPSSSAILEIKASEIISSNSYKAGSTLRFPRVERVREDRAWYSCMTLSEINEMRKMASGK
LVTRHCSFQDDIPSGKRIKTASVIAGVATPFQAADISDVKRSSNCFSDKEICVLNGSSSF
TKQELERSVVSGGGVVVQHPTHSTFCIIAAKDDIRVKSLKARPKWDIVCPAWLLRCLNLN
RLIPFRPQDLLVVTQATKEILAQNFDRFGNSLREATSVEDVGPILQQVKDLENPVPLSVY
EIADLEYEIFGKLHKYGIFRTCIVYVDVWETISDFNSLIISRELRIISLDLRIYGAQVLN
HMDHSVTHVVCDPVAYPHRASMWKSINRQQEVKFKLVRPEWIAHSITQGNLLDEIIYCP
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgctatttcgggaattttgtagcgcatgtgaagaaatttgtttaagcaagagaagtgag
aagttagatcgtctcaagaagctcctaagggagtgtaggcaaagaattctagacgaccca
aacctcactacatattccgtgatgcgtcttcttctcccccacctcgatcgctcgagagca
tcttatggaattaaagaggcttcattagcaaaattatacataaaaatattttgccttcct
aaggatggaccagatgcaattaggttgctgacatataaggtaccaaaaactacacaaact
ctggccaaagattttgcagacacctgctacaacattttaaggactcgctgtagctcagat
gttagttcattgagtgtttctgaaatcaaccaatatctagaaaatttatcaaaaacctac
atgtcaaagaagttggaaaacacagaaaagcttctgcagcctctcttgatgaaattgtct
gcattggaacaaaaatggttaatcagaataatcctaagagatgttaaacttacagggctg
agtgacaagattgtgttgtcagcttatcatccagatgcaaaggaattatatgatgtctca
aatgatcttgagaaagtgtgcataacactacttaacccattaagtcgatcttccgaaata
gaaatttccctctttaatccttttcgcccaatgttagcagatagacttgaaatgtctaaa
attttcgcgaaaatggggaacaagccattctacgtagagacgaaaattgacggagaaaga
atgcaaattcataaaagcggaaagaggtatgggtattattcacggcgtggctttgactac
acgtcaaacttcggaaccaactcgtcatcgggaaatcttagccctcgtctagaggaatgc
ttccgtgaaactgtgaccagttgcattatagatggtgaaatggtagcttggaacgtcaaa
ggttcctttatagtgtctaagggcgaaaacatagacgtcaagtccatatcttctactggc
gaactgattccatgtttcgtcgcttttgatattctattattgaatggcgaagtcctatct
aatctaccatacaaggaacgactaaagctactggaatctgcagttaaaattaaagaaagt
gttattcagtttccgaatcgcaagcttgttacgacaaagatggaagtcactaacttgctt
aatgacgcaattgatcaacgcgaagaaggaatcgtcctgaaaaatccagactcaatctac
aagcctaatgaacgcaaaggaggatggttcaaggtcaaacccgagtacgttaacgaaatg
atggatcatttagttttccaatcttatgctacattagatttgatcatattgggtggctac
catggacagggaagacgaagaaatttgatcgcgatgtttttagtaggtgtggccgtccca
tccttagaaaaagagaaagaacaactggaattctattctttcgctcgtgttggctcgggt
ttttcagataaacaacttcgtagtttactcgaaaaattgaacccccattggcaaaagtgg
gacaaaaatgcccctccaccaaaaattcactgtagcagagaaaaaccagatgtttggatc
aatccttcgtcttcagcaatattagagatcaaagcgtcggaaattatttcgagcaactct
tacaaagccggatctacgttacgatttcccagagtggagcgcgtacgtgaagaccgagct
tggtattcctgtatgactttaagtgaaataaacgaaatgagaaaaatggcttcgggaaag
cttgtcacgcgccattgcagttttcaagacgatatacctagtggcaaacgcattaaaaca
gcaagcgtgattgcaggagttgctactcccttccaagcagcagatatatctgatgtcaaa
aggtcatcaaactgtttttccgacaaagagatttgcgttttaaacggctctagttccttt
acgaaacaagaactagaacgaagtgtggtgtcaggtggtggtgttgttgtccagcatcca
acacattctacattttgcattattgctgcaaaagacgatatacgagttaaaagccttaaa
gcacgaccaaaatgggatattgtctgtcccgcatggctactgcgctgtttaaacttgaat
cgcctgattcccttccgtcctcaagatttactggtcgtcacgcaagctacaaaagaaata
ctggcccaaaacttcgatcgatttggcaatagcctgagagaagccacttcagttgaagat
gttggtccgattcttcagcaggtcaaagatttggaaaacccggtgcctttaagtgtatat
gagatagctgatcttgaatacgaaatatttggaaagttacacaagtacggcattttccga
acctgcattgtttatgtcgatgtctgggaaacgatatcagatttcaatagcctaataatt
tcccgagaactgcggatcatttcgcttgacctccgcatctatggcgctcaggttttgaat
cacatggaccattcggtcactcatgttgtatgtgatccagtcgcttaccctcatcgagcc
tctatgtggaaatcgataaatcgtcagcaagaagtcaagtttaaattagttcgaccagag
tggattgcacattccataacccaagggaatttgcttgatgaaataatctattgtccctag
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