Daphnia magna (water flea): 116933038
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Entry
116933038 CDS
T07514
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116933038
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
116933038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
116933038
NCBI-ProteinID:
XP_032796832
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All DBs
Position
LG10:complement(9341761..9345909)
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AA seq
1189 aa
AA seq
DB search
MAARPKLVCGEDELMEMQEKFRSGGITNSISSKVIKAPHKTNASIPGNESIFAKRREMVE
KIKENTFHFQLPKVQVLKDVVEKCETVEIKVPEKKRENHFPEVFQRMKSMKASGSGSIFA
QQLRKAKMMRDEVAELPSVILPSCLNQCSEIAKAVLGETEANKIHQENVQKLSSMTDKDI
LREQQQLLQTLDPKLIALLKNKKKSTSSSNQILVETPTVTEISKETEDEPEIGEIHEMKN
SKWLHMNHMEKEKVRWMASLPPLKEIPGESFQARFDFQGRLLEANVDLPVTIALHHHGEE
PERAGYSINELMLLSRSSKMQQRVLALNTLANILENTRLGIYDSCFEAPLIPVLLDNRFL
MLVRFCLDDSAPSVVAAALVALSRLLSSPFDETCLERCFIWHLGEKQPNLCSRIQMDSTD
QEQEAEMKDYEMSRVDVIKVCLRMDIPLRIRYIFEEIRPEAPAVIAAIEILTRMARHSSA
VAQSIVDCPRLMDAIFQFFLPKDVTSLCTSQEQDRVNNVYGLPVRQVLRLARVIASWNAE
LATRLVVKYALLESIKIYVAIDTVQLNLPTQEALLLVLDSYYTWRTLLRQGVGIESFLEF
YPVWFPQLQSYQSSISMDSGYSNSSNARFSHHLGSSLLLLMEALLSACCTSGCCAGSCLG
DHKHLHIKQVGGLREAVEICVAKWTWQLRKITDPIPDSAGSLLATGIHLLATFYTHWIDP
QAPSLLDKLCSSHILPLLHSEPMQELAKLLIQHSNLSSTLQSCSRFPESLPSVCATAMGG
ELVPIMASSNPFPLFTSIFRLLRIWKDKSASAQVVDLRIPNSCFDYLVNLTGPLSSLSGN
WFTRYELQFLHEFLMICAEWGAFTPEQSRLAHQVALTAITSLGPGAEVIAVDWILHLIFQ
KDFILRGFDLDTSLEQLHLNETLLSITLNGLSHVGNFYSDQLLPEESRKHSRTVLTLEHR
QILPTDWIYLPLVLLYQRDLEKPLEGNTNIVETALFSLRAVYVLLFLQPTWFFHVQPTEH
YARLACTFLAGNDIFLDKTINDYMWPILRKLARQHLDFSRPVSGVDDFIDLYERLIDQFE
AVSYGNPLFAAFLLLPLQQHQPVRFRLKLWCEHPNALRILTLNDQQMLHSLDHWKEPTET
NEVLLIKYAASIRSGTITSQRNPVLFEIATHHITHYVERNPHALDKLNL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaagaccaaaattggtttgcggagaagacgaattgatggaaatgcaagaaaaa
ttcagatctggagggataacaaattctatttcatcaaaagtgataaaggcacctcacaaa
actaatgccagtattccaggaaatgaatcaatatttgctaaaagaagggagatggttgag
aaaataaaggaaaacacatttcattttcaacttccaaaagtccaggtattgaaagatgtt
gtagaaaaatgtgaaactgtagaaataaaagtacctgagaaaaagagagaaaatcatttt
cctgaggtattccaaagaatgaagtccatgaaagcttcaggttctggaagtatatttgct
caacaacttagaaaagcaaagatgatgagagatgaggttgctgaattgccttctgtcata
ttaccatcttgcctaaatcaatgtagtgaaattgctaaagctgttcttggagaaacagaa
gccaacaaaattcaccaggagaatgtacagaaactatcatcaatgacagacaaagatatt
cttcgagaacaacagcaattactacaaaccttggatccaaagctcattgcattgttgaag
aacaaaaagaaatctacttccagttccaaccagattttggtagaaaccccaacagtaaca
gaaatctcaaaagaaacagaagacgagcctgaaatcggagagatacatgaaatgaaaaac
tcaaaatggctacatatgaatcacatggaaaaggaaaaggttaggtggatggcctcactg
cctcctctcaaagagattcccggcgaaagctttcaagctcgatttgatttccaaggtcgc
cttttggaagccaacgttgatttaccagtgacgatcgctctccatcatcatggtgaagaa
cctgaaagagctggatactccatcaatgaactgatgttactaagtcgtagcagcaaaatg
caacaaagggtattggctttgaatacccttgccaacatattggaaaacactcggctaggc
atctatgattcatgttttgaagccccactcatacctgtgttgttggacaataggttcttg
atgctcgtgcggttttgtttggatgacagtgctccttcagttgtcgctgctgctcttgtc
gctttgtcacgtttactttcctctccgtttgatgaaacctgtcttgaacgttgcttcatt
tggcacttgggcgaaaagcaaccaaatttatgtagtcgcatccaaatggattctacagac
caggaacaagaggctgaaatgaaagactatgaaatgagtcgcgtggatgtgattaaagtt
tgcctgcgaatggatattccgctcaggatccgttacattttcgaagaaattcgaccggaa
gcgccagcagtaattgctgccattgagattcttaccaggatggcacgacattcctctgct
gtcgctcaatccatcgtcgattgtccacgtttaatggacgctatctttcagttttttctt
ccgaaagatgtgacatcgctttgtaccagtcaagaacaagaccgagtaaataacgtttat
ggcttgcctgtccgccaagtcctccgacttgctcgtgtgattgcctcatggaacgcagag
cttgccaccagactcgtcgtcaaatatgcacttctagaatccatcaagatttacgtagcg
atagatacagtgcaactaaatttaccaacgcaagaagcccttttgctagtgctggatagc
tattacacatggcgcactcttctccgacaaggagtcggcatcgaatcattcctggaattt
tatccagtttggtttccacaacttcagtcttatcagtcttcaatctcgatggattctggg
tacagcaacagtagcaatgcacgcttcagccaccatttaggttcctctctgctgctgttg
atggaagcacttttaagtgcgtgttgtacctcgggatgctgcgcaggaagctgcttggga
gaccacaaacatttacatataaaacaggttggcggtttaagggaagccgttgaaatttgt
gtggccaaatggacatggcagttacgtaaaattacggatcccatcccagactcagctgga
agcctactagctaccggaattcacttattagccacgttttacacacattggattgatccg
caggctccttctttactggataaactttgttctagtcatatccttccattgcttcactca
gaacccatgcaagagctcgccaaattgctaattcaacacagcaatctttcttccacactg
cagtcctgttcgagatttccggagtctctgccatccgtctgtgccactgcgatgggtgga
gaattggtcccgataatggcctcttctaatcctttccctttgttcacatccatttttcgg
ctgttgaggatttggaaagacaaaagtgcatctgcccaggttgtggacttgagaataccc
aattcgtgtttcgattacttggtgaatttgactggcccgctgtcttctttatctggaaat
tggtttacgcgttacgagttgcagttccttcacgaattcctcatgatctgcgctgagtgg
ggggcgttcactcccgagcagtcacgtttagcacatcaagtggccttaacagcgataacg
agccttggtcctggtgcagaagttattgctgtagactggattcttcatctgatatttcag
aaagattttattctacgtggttttgatctagacacaagtttggaacagttgcatctgaac
gagaccttgctttcgataactttaaatggattaagccatgtgggaaacttttacagtgat
cagctgctcccagaagaatcaaggaaacattccaggacagtgttgacactggagcatcgt
caaatccttccgacagactggatctatttaccattggtgttgctgtaccagcgagacctc
gagaagcctctcgaaggaaacacgaacatcgtggaaacggctttgttttcgttgcgagcc
gtttatgtccttttgtttcttcagcctacgtggttcttccacgtccaaccgacagagcat
tatgctcgtctagcttgcactttcctggccggcaatgatatttttctggataaaacaatc
aacgattacatgtggcctatcttacgcaaattggctcgacaacatttggattttagtaga
cctgttagcggagtggacgacttcatcgacctttatgaacggctaattgaccagtttgaa
gccgtttcttatggcaatccgctttttgcagcatttctcctgttgccacttcaacagcat
caacccgtccgttttcgtttgaaattgtggtgcgaacatccaaacgccctacgcatcctc
acattgaacgatcaacagatgctgcattcgttagatcactggaaagagccaactgaaaca
aatgaagttttgctgataaagtatgcggcttctataaggtctggcaccataaccagccaa
cgaaacccggtactcttcgaaatagcgacacatcacattacacattatgttgaacgaaac
ccgcacgctcttgataaattgaatttgtga
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integrated database retrieval system
