Daphnia magna (water flea): 123475750
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Entry
123475750 CDS
T07514
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123475750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmk03041
]
123475750
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123475750
Spliceosome [BR:
dmk03041
]
Complex A
U2 snRNP components
U2 related factors
123475750
Complex B
123475750
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CdAMP_rec
CSN1_C
Motif
Other DBs
NCBI-GeneID:
123475750
NCBI-ProteinID:
XP_045034713
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All DBs
Position
LG9:complement(4206618..4211009)
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AA seq
990 aa
AA seq
DB search
MARDGHKHNKRSRSRSASPRSKKLRERDRDGENRQRDRDRDRDRDRERERDKRRSRSKER
EYEKSKKPSSTSERRNSKSPERKPPLVEEIKPVVKSESELKEEAAMAAMMAKEEEQKTLD
LEMQKRRERIEKWRLERKMQEMAQVKSDLANQRAGKKWSLEDDEEEEEVTAEIISEEMEV
QEAVEEVDPLDAFMQDIQTEVRKVQNLDVQKSKGFGVMVMTGVAKKAAKKKGELVEQNQD
ALEYSSEEESEDLASAMSGLANSNIKQKEKVFKIDHNKISYFPFRKNFYVEVPDIARMTS
EEVDEYRLELEGIKVKGKGCPKPIKAWAQCGVSKKEMEILKKLAYEKPTPIQTQTIPAIM
SGRDIIGIAKTGSGKTLAFLLPMFRHILDQPALEETDGPIAIIMSPTRELCLQIGKECKR
FTKALNLRVVTVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYIV
LDEADRMFDMGFEPQVMRIIDNTRPDRQTVMFSATFPRQMEALARRILNKPIEITVGGRS
VVCADVEQHVLVMEDEQKFLKLLELLGVYQEQGSVLVFVEKQESADDLLKDLMKAGYDCI
SLHGGIDQYDRDSAVVDFKNGKIKLMIATSVAAHGLDVKHLILVVNYDCPNHHEDYIHRC
GRTGRAGNKGFAYTFITPDQQRAAGDIIKAMEQSNTPVPAELQNLWDQYKSKLTAEGKTV
RSGGGGFSGKGFKFDESEAMAVSEKKKFQKAALGLQDSDEEDIENDLDEQIETLMAAKRI
VREVQASTIVSGGGGSVASSIPSKTAIDKLELAKRLASRINLAKQPTGPVPAMPETSIGA
ISARNVAEQLAAKLNTRLNYAPVENEELIEGSLEDGGENTPAASDVIQKFEEELEINDFP
QPVRWKITSREALAQVSEFSEAGVFVRGTYCAPGKKVADEERKLYLAIESTSEMAVSKAR
KEIVRILKEEMLRLASSTSYQGSKTGRYKV
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggcacgagatggacacaagcacaacaaacgctcaaggagccgatcagccagtccccgt
tcaaaaaaacttcgtgagcgagatcgggatggtgaaaatagacaaagagacagggatcga
gatagagacagagaccgtgaaagggaacgggacaaaagaagaagcagatcaaaagaaaga
gaatatgaaaaatctaaaaaacctagttcaacatcagaaagacgaaattcaaaatcacca
gaaaggaagccaccattagtagaagaaatcaagccggttgtgaaatcagaatcagagctt
aaagaagaggcagcaatggctgctatgatggccaaggaggaggagcagaagacattggac
ctggaaatgcaaaagagacgagaacggattgaaaaatggcgattagaaaggaaaatgcaa
gaaatggcccaagtaaaatctgacctagccaatcagagagctgggaaaaaatggtcgctt
gaagatgatgaagaagaggaagaggtaactgccgaaatcatctcagaagaaatggaagtc
caagaagcagtagaagaagtcgaccccttagatgcttttatgcaggatatacaaaccgaa
gttcgcaaggtgcagaatctcgacgttcaaaaatccaagggttttggagtgatggtaatg
acaggtgtagcgaagaaagctgcaaaaaaaaaaggtgaactagtggaacaaaatcaagat
gctttggaatattcatctgaagaagagtcggaggacttggcatcagcaatgtctggtcta
gctaatagcaacatcaaacaaaaggaaaaagtttttaaaattgatcataacaaaattagc
tattttcctttccgcaaaaacttttatgttgaagtgcccgatatagcacgcatgacttca
gaagaagttgatgaataccgactggaattagaaggcattaaagtgaaaggaaaaggatgt
ccaaaacctatcaaagcgtgggcacagtgtggagtaagcaaaaaagaaatggaaattctg
aaaaaattagcatacgaaaaaccaacgcccattcagacgcaaaccatcccagcaatcatg
tccgggcgggacataataggtattgccaagactggcagtggtaaaacgctagcttttttg
ttgcccatgttcaggcatattttagatcaacctgctctagaagagactgatggaccaatt
gccatcattatgtccccaactcgagagttgtgcctacaaatcggcaaagaatgcaaaaga
ttcaccaaggcgttgaatttgcgtgttgtaacggtttacggagggacaggtatatcggag
caaattgcggaacttaaacgcggtgcagagattatcgtgtgcaccccgggaaggatgatt
gatatgttagctgccaataatggacgtgttaccaatctaagacgcgtgacctacattgtg
ttggatgaagctgatcgaatgtttgacatggggtttgagccacaagtaatgcggatcatc
gacaatacccgacctgatcgccaaactgtcatgttcagtgccacatttccgcgacaaatg
gaggcgttggctcgtagaatccttaataaacccatcgagatcacagttggtggccgtagc
gtagtttgcgccgatgtcgaacagcacgttctggttatggaggacgaacaaaagtttttg
aaacttttggagctattaggcgtgtatcaagaacaaggtagtgttcttgtattcgtagag
aaacaagaaagtgcggacgacctactcaaagatctcatgaaagccggatacgactgcatt
tcgcttcatgggggcattgatcaatatgatcgtgattcggctgtggtcgacttcaaaaat
ggaaaaatcaagctcatgatcgccacatctgttgccgctcatggattagatgtaaagcat
cttattttggttgtaaactacgattgcccgaaccatcatgaagactatattcatagatgt
ggacgtactgggagagcaggcaataagggatttgcttacacttttatcaccccagatcag
cagagagcagcaggcgatatcattaaagccatggaacaatcgaacacgccagttccagct
gaactacaaaatctttgggatcaatacaaatccaaacttactgcggaaggaaaaactgtc
cgatcaggcggcggtggattttccggaaaaggattcaaattcgatgaatcagaagctatg
gctgtatcagagaagaaaaagttccagaaagccgctttaggcctccaagattcggatgag
gaagatattgaaaacgacttagatgaacaaattgaaactctgatggctgccaaacgaata
gtgcgggaagttcaagcatccaccattgtctccggaggcggcggttcagttgcatcaagc
attccgagcaaaacagctatcgacaaactagaattagcgaagcggttagcttcaagaatt
aatcttgccaagcaacccaccggaccagttccagcaatgcccgaaacctcaataggggca
atttcggctagaaatgttgcagagcaattggcagccaaactcaatacacggctcaactat
gctcctgttgaaaatgaagaactaattgaaggatcgttagaggatggcggagaaaatact
ccagcagcctctgatgtcatccaaaagttcgaggaagaattagaaattaatgacttccca
cagcctgttcgctggaaaatcacatcaagggaggctttggcgcaggtgagcgaattttct
gaagccggcgtgttcgtccgaggaacgtattgcgcacccggcaaaaaagtcgctgatgag
gagagaaaattgtatttagcaattgagagcacgagtgaaatggcagtgtcgaaagcacgt
aaagaaatcgtccgtattctcaaagaagaaatgcttcgattggccagttccacctcctat
caaggttcgaaaactggcagatacaaagtttga
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