Drosophila miranda: 108161504
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Entry
108161504 CDS
T06132
Name
(RefSeq) probable RNA helicase armi isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dmn
Drosophila miranda
Pathway
dmn03013
Nucleocytoplasmic transport
dmn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108161504
03015 mRNA surveillance pathway
108161504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmn03019
]
108161504
Enzymes [BR:
dmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108161504
5.6.2.5 RNA 5'-3' helicase
108161504
Messenger RNA biogenesis [BR:
dmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108161504
mRNA cycle factors
Common to processing body (P body) and stress granule
108161504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
108161504
NCBI-ProteinID:
XP_033242663
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All DBs
Position
XR:4392688..4395322
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AA seq
190 aa
AA seq
DB search
MATYSKLFYDYELIPTVSEKDSREATLLATVQSLLGTGKPRNHGVCFFEMKGQDMQHPDS
ASWYDDLEATELYLMVLSLYCRGVTSDQIGLLTPYAKQAKTLRGMFMDTDIVMPKVDSIE
KFQGQERDIMLISTVRSTGDHISHKRIILAIARARAFLVIYGNPHLLSVDDNWRHLINHS
FISKWNTNKY
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atggccacatatagtaagctgttctatgactatgaattgataccaacggtatccgagaag
gattcccgagaggccaccttgttggccacagtgcagtccctactaggtactggcaagccg
cgcaaccacggtgtctgtttctttgagatgaaggggcaggatatgcagcacccagactct
gcctcgtggtacgatgatctcgaagccacggagttatatctcatggtcttatcgctgtat
tgtcgcggagtgacttccgaccaaattggtcttctgacgccctatgcgaagcaggcgaag
acgttaaggggcatgttcatggacacagatattgtcatgccgaaggttgactcgattgaa
aagttccaaggacaggagcgcgacataatgctgatttccactgtgcgctccactggagac
catataagccataagcgcataattttggccatagcgcgcgcccgcgcatttttggtcata
tacggtaatccccatctcctcagcgtcgacgacaattggcgtcatctcatcaaccatagc
tttatttccaaatggaatacaaataaatattag
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