Drosophila miranda: 117192475
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Entry
117192475 CDS
T06132
Name
(RefSeq) uncharacterized protein LOC117192475 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dmn
Drosophila miranda
Pathway
dmn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117192475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmn03021
]
117192475
03019 Messenger RNA biogenesis [BR:
dmn03019
]
117192475
Transcription machinery [BR:
dmn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117192475
Messenger RNA biogenesis [BR:
dmn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117192475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
zf_UBZ
Siah-Interact_N
Motif
Other DBs
NCBI-GeneID:
117192475
NCBI-ProteinID:
XP_033253058
LinkDB
All DBs
Position
Y
Genome browser
AA seq
2007 aa
AA seq
DB search
MDQLFQSYRDDERRIGEEDLSSLQDLNCNSKPLINMLTMLAEENINYAHVIVRVVEYYIS
QVPPEFKLPILYLIDSIIKNVRSSYVQLFAQCIVNIFLNAFESVQHSQSQLLEKVRERMY
ALRQTWNEVFPPSKMYALDVKVKRLDNNWPITAKNPTNKIHVNPAIHVNPDFLKTGLVPG
MPVNSTLPSDMEEILQAKTRELLELKKRKLELELEQTKKHLEEQERQLNQATDAIAVAPN
VAMPAPPASVAALRPPVMDPVVRNSRNAGNPGIPNTPAAQQPFSAKSRVNPVNPALLNSV
RQRDPRLARQMQSQVEAAPSRSSDPRLEVKSSSSSHKSSRSRSNSPVRNSSRSTKSNNGS
SSHPNSSSNRKRSESKSSTSSSGSDARHKSGGGASSSTLSPAKRSSKPSAKEHSDRHDRN
GSPSNSKRKSTSPTTSPSKSKRNAAHKSSSSMRGKSSSTRSLSRSPIFMDVDLRSGGGKS
PEQKTAAPESLSQVAAAASASSSALAAAVAAKVTIITNDLEKHTFQILEPGPPAPAASSP
PIMVASSMDIDLRRPQTPPPPAFAIAKTKPLDQSNSRSTTNTTTTTITSNNNSISSSSTT
KIASSASNASSPSSTSTTSSSKLPAKVSFKIQKQFNKLDKSTANLSTALLLSPSTSASAS
ALAAASAPLVNQSSPQGNVSETLQQSINKLLQVQGITGEKRSADSLPPEIDEDEQPQQQK
RSKSTKLDALFGSEDVDLRREIPAVVKPGSANAVIVVEDDSMDNCDVEKPQSKTNSQLKM
PSLDELRAKLAKSARLHNKLSGKSDKVRDQSVVQRLKQLAELKANDDLQGAHDEKMRTIL
SQAQEMYENHNMNQEQYKDLVQKVVAINENSKIKESRRRPDGAEVERNAARDAVLRKRIP
KLKSNENHSSGSPRSDGSPRYEDQPIQGSTSTEKPTQNKREKSKRKNKRRKPSKWGEQLD
PAAAQRAAWQLANVNNNNNNNNNNNNNNNKRCGAGGAGGSLPVVPPGFRGMPWQQPPAIV
KPQTIVPPPPQPPSMMGLPPVPPVTMTKAINSLDNPMADVVRSITIDGGSKEIRFYNQVA
IIFMDGDEPHEIGFQDGQRVILIDHNEPLPLSFNNDYKPFHLDGALHRIRFGFPSRELYI
DDHWYEIYFGGPPVSLPIGNSLHVLKAEGPPPNVDIGRVRRGLVVGKINMIVDAHTIVPL
FLDARQQTFQMGAEQHSIQFVDSFQYALLDGQLQKIEYGGLPKGMKLNGGPSCFIRFGTL
PKGVVAGKTHVADMVYIKTEAPAEPPQPPPMIVQPLPVVEQQPAAAAHAPAVSLPAASNS
LGNLNINDLFQKLVSSGIIGGTSIPGISSGESTSTKEAPAAAAPADAQATAAPPVYVSPP
TEPIKRINLQRLETIKTRQSAVVATLYLGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNRS
ERDSTRKATSRRWYYDLNDWRQYEEIEDVEEREKNFLDTQGQPGGPDAIDDLSQQRSLDS
PVLTCAAGNDDVDRSCDMCHEKFEQFYNEELEEWHLRSAIRVEDKIYHPLCYEDYKTSLN
PPAEQKDSKDVDMNNTDDNAMDTVLKLEDGDAAKPAPNLFDDDDDDVIVLPNEEPSVTEI
VDDDEYVPANVTRAEMGNETEDKVKPSSGCEDDGEKQKSSQQPQNESANESDVEIQEPNI
PFTDLDTYVEKEIDDETRLALLNVKIKEEPKDEYDEDEDDGFEDVGTVLPLLPLPEDEIS
INSSETQTQTIGSLPSPATIERPVSVVSLTLPANDDELEAADTVATVANAETELNGDPQE
STHNLSAAGPAPALPLASLVNRIKINITKNTSSIVSNSASNGSSMAATSTPAAATMGSAA
DTQDSAISVIGGSGNCSSLETSQQVNAIQTISTIPVLCGGNTFVPKIATSASANISSISV
IGSSYGTNSRNSNSIATTTAPTSATVSAVVGAGSSSAVAQKPATPPPAVDADPEPVVELK
PALRNVTLKRTKKVQNGTETSGLCSIM
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggatcaattatttcagtcataccgcgatgatgagcgacgtattggtgaggaggatctg
tcgagtctacaggacttgaactgcaatagcaaaccgctcatcaacatgctcacaatgctg
gcggaggagaacattaactatgcacacgtcatagtccgcgtggtggagtactacatcagc
caggtgccgcccgagtttaaattgcccatactatatttaattgattcgataattaagaac
gtgagaagcagctacgtgcagttgttcgcacaatgtatagtcaacatattcctcaacgcg
ttcgaatcggtgcagcattcccagtcgcagttgctggagaaggtgcgcgaacggatgtat
gccctgcgacagacctggaacgaggtgttcccaccttccaagatgtatgccctagacgta
aaggtgaagcgtcttgataataactggcccattacggccaagaaccccaccaacaaaata
catgttaatcccgccattcatgttaatccggactttctcaaaacgggtttggttcctggt
atgccggttaactccacactgcccagcgacatggaggagatactccaggctaagacccgc
gagcttctggagctcaagaaacgcaaactggagcttgagctggagcaaaccaagaagcat
ttagaggagcaagagcgtcagctgaaccaggcgacggatgctattgctgtcgcacccaat
gtcgctatgccagcgccacccgcttctgttgctgctcttcgtccacctgttatggatcca
gtcgttcgaaattctcgtaacgctgggaatcctgggataccaaacacgccagctgcccaa
cagcccttttccgcgaagtcaagggttaatccagtcaatccggctctactgaactctgtg
cgtcagcgggatccacgtttggcgcggcaaatgcaatctcaagtggaggcggctccctcg
cgatcctctgatccccgtctggaggtaaaatcctcctcatcttcgcataaatctagtcga
tcgcgcagcaattcaccggtacgcaacagcagtcgctccaccaagagcaacaatggcagc
agctcccatccaaacagctcatcgaatcgcaagcgcagcgaatccaagagctcaacatct
tcatcgggctctgatgcacgacacaaaagtggaggtggcgctagctcctcgacactatcg
cctgccaaacgctcatctaaaccatcggcaaaggagcattccgaccgacatgaccgaaat
ggatcaccgtcaaattcgaagcgtaaaagcacctctccaaccacctcgccatcaaaatct
aagcgcaatgctgcacacaaatcgtcatcgtccatgcgcggaaagtcgtcctcgactcga
tcactcagtcgctcgcccatcttcatggacgttgacctacgtagcggtggtggaaagtct
cccgaacagaaaacagcagctccagaatccctatctcaagtggcagcagcagcatcagca
tcatcctcagcattagcagcggcagtagcagcaaaagtgacaatcatcacgaatgattta
gagaaacatacatttcaaatacttgaaccaggccctccagctcctgcggcttcaagtcca
ccgattatggtggcatccagtatggacattgacttgaggcggccccagacgccgcctccg
ccagcattcgccatagctaaaaccaaaccactcgaccagagcaacagcagaagcaccacc
aacacgaccacaacaacaatcacatccaacaacaacagcatcagcagcagcagcacaaca
aaaattgctagtagcgcctccaacgcatcatcgccatcatctactagtactacgtcttct
tcaaaattgcccgcaaaagtgtcgttcaaaatacaaaaacagtttaataaattagataaa
tctacagcgaatctatcaacagcattactgctaagcccatcaacatcagcatcagcatct
gcattagccgccgcatccgcaccactagtcaatcagagctcgccgcagggtaatgtatcg
gagacactgcagcaatccatcaacaaactgctgcaggtacaaggcatcactggggagaag
cgttccgcagattcgctacccccagagatcgacgaggatgagcagccacagcagcagaaa
cgcagcaaatcaactaaactggacgctctcttcggcagcgaggatgttgatctgcgtcgc
gagattcccgctgtggtgaagcctggaagtgcaaatgcagtcatcgtggtggaagacgac
tcaatggacaactgtgatgtggaaaagccacaatccaaaacaaattcgcagctcaagatg
ccatcactcgatgagctgcgcgccaagctggccaagtctgcgcgtctccacaacaagcta
tccggtaagtccgacaaagtcagagatcagtctgtggtgcagcgtctcaagcagctggcc
gagctgaaggccaacgatgatttgcagggggcgcacgacgagaagatgcgcacgatcctc
agccaggctcaggagatgtacgagaaccacaatatgaaccaagagcagtacaaggacctg
gtccagaaggttgtggccattaacgagaacagcaagattaaagagtcccgtcgccgacct
gatggtgcggaagtggagcgtaatgcagcccgagatgctgttctgcgcaagcggataccc
aagctcaagagcaacgagaatcattcctctggctcgccacgcagcgacggctcccctaga
tatgaggatcagccaatacagggatcgacgtccaccgaaaagccgacgcaaaataaacgg
gagaagtccaagagaaagaacaagagacgaaagcccagcaaatggggcgaacagctggat
cctgcggctgctcaaagggccgcctggcagttggccaatgtcaataacaacaacaacaac
aacaacaacaacaacaataacaataataagagatgtggagctggaggagcggggggttcg
cttcctgttgtaccacccgggttccggggaatgccctggcaacagccgcctgcgattgtg
aagccacaaacgatcgtcccgccaccaccacagccgccctcgatgatgggtctgccacca
gttccgcccgtaacaatgaccaaggccatcaattcgctggacaaccccatggcggatgtg
gtgcgcagcatcaccatagatggcggatccaaagagattcgcttttacaaccaggtggcc
atcatatttatggatggcgacgagccgcacgagattggcttccaggatggccagcgcgtg
atcctgatcgatcacaatgagcctctgccgctaagcttcaacaacgactacaagccgttc
catctagatggggccctacatcgcatccgttttggctttccctcccgcgagctctatatc
gacgatcattggtatgagatctactttggtggaccgccagtctccctgcccattggcaac
agcctgcacgtactcaaggcggagggtcctccgcccaatgtggacattggccgagtgcgt
cgtggcctggtggttggcaaaataaacatgattgtggatgcccacacgattgttccactc
ttcctggatgccagacagcagaccttccagatgggagccgagcagcattcgatacagttt
gtggacagctttcaatatgctctcctcgatggccagctccaaaagatcgaatatggcggc
ctgcccaagggcatgaagctgaatggcggacccagctgctttatccgattcggaaccctg
ccaaagggcgttgtggccggcaagacgcacgtggctgatatggtctacattaagacagaa
gctccggcagagccaccccagcccccaccgatgattgtccagcccctgcccgtagtggag
cagcagccagcggcagcagcacatgccccagccgtatccctgccagctgcatccaattct
cttggcaatctgaatatcaatgatttgttccaaaagctcgtctcgtctggaataattggt
ggaacctctattccgggcatatcgtctggcgaatcaacctcaaccaaagaagcgcccgca
gctgccgctccagctgatgcccaagccacagccgcccctccggtgtacgtttcgccgcca
acggagcccatcaaacgcatcaacctacagaggctagagactattaagacccggcagtcg
gcggtggtggccacgctctacctgggcatgcagtgcagcagctgtggtgtgcgtttcccg
cccgagcagaccattaagtacagtcagcatctagactggcacttccgtcagaaccgaagc
gagcgtgactcaacccgcaaggccacctccaggcgctggtactatgacctgaatgactgg
cggcagtacgaagagatcgaggatgtggaagagcgggagaagaattttctggatacgcag
ggccagccaggcggccccgatgcaatcgatgatctctcccagcaacgatcgctggactcg
cctgtgctcacctgcgcagccggtaacgatgatgtggaccgctcctgcgacatgtgccac
gagaagttcgagcagttctacaacgaggagctggaggaatggcacttgcgcagtgccatt
cgcgtcgaggataagatctaccatccattgtgctatgaggactacaagacttcgttgaac
ccgcccgcagagcagaaagactccaaagatgtggacatgaacaacaccgatgacaacgca
atggacacggtacttaagctggaggatggggacgccgctaagcctgcgccgaacctgttc
gatgatgatgacgatgatgtaattgtgttgcccaacgaagagcccagcgtcactgaaatt
gttgacgacgatgagtatgtccccgccaatgtgacgcgcgccgaaatgggcaacgaaacg
gaggacaaggtgaaacccagctctggctgcgaggatgatggggagaagcagaaaagcagc
cagcagccacagaatgaatcagccaacgagtctgatgtggagatccaagagccaaacatt
cccttcaccgatctggacacgtatgtggagaaggagattgatgatgagacgcggttggcc
ctgctaaatgtaaagatcaaagaggagcccaaggacgagtacgatgaggacgaagacgat
ggcttcgaagatgtgggcacggtactgccactgctgcccttgcccgaggatgagatatcc
atcaacagcagcgaaacacaaacccaaacgattggatccttgccctcgccggctactata
gagcgaccagtttcggtggtctcgctcactcttccagccaacgacgatgagctggaggcc
gcggacacggtggcgacggtggccaacgcggaaacagaactgaatggagatccgcaggag
tcgacgcataacctgagcgcagcaggaccggcaccggcgttacctttggctagcttagtt
aatagaataaaaataaatatcactaagaatacaagtagtatagtaagtaatagtgcctcc
aacggctcatcaatggccgccacatcgacgccggcagcagcaacgatgggatcggcagcg
gatacgcaagactcggccatcagtgtcataggcggatccggaaactgcagttctctggag
acctcgcagcaggtgaacgcaattcaaaccatttccaccattccagttctgtgcggcggt
aacacattcgtccccaagattgcaaccagtgcttcagccaatatcagttccatctcggtc
attggcagcagctacggcaccaacagccgcaacagcaactcaatcgcgaccacaacggca
ccaacttcggcgacagtctcggcggttgttggagcgggatcatcttctgccgttgcccag
aaaccagccacacccccgcctgctgtcgatgccgatccggagccggtggttgaactgaag
ccagcgttgcggaatgtgacgctcaaacgaacgaaaaaggtccagaatggcaccgaaaca
tcgggtctctgctcgatcatgtaa
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integrated database retrieval system
