Drosophila mojavensis: Dmoj_GI13953
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Entry
Dmoj_GI13953 CDS
T01062
Name
(GenBank) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dmo
Drosophila mojavensis
Pathway
dmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dmoj_GI13953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmo03019
]
Dmoj_GI13953
03041 Spliceosome [BR:
dmo03041
]
Dmoj_GI13953
03009 Ribosome biogenesis [BR:
dmo03009
]
Dmoj_GI13953
03016 Transfer RNA biogenesis [BR:
dmo03016
]
Dmoj_GI13953
Enzymes [BR:
dmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dmoj_GI13953
Messenger RNA biogenesis [BR:
dmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Dmoj_GI13953
Spliceosome [BR:
dmo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Dmoj_GI13953
Complex C
U4/U6.U5 tri-SnRNP related factors
Dmoj_GI13953
Ribosome biogenesis [BR:
dmo03009
]
Eukaryotic type
Pre-60S particles
Helicases
Dmoj_GI13953
Transfer RNA biogenesis [BR:
dmo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Dmoj_GI13953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
EDW11632
FlyBase:
FBgn0136707
UniProt:
B4KKI2
LinkDB
All DBs
AA seq
1063 aa
AA seq
DB search
MDIEELFECFKEQPSQSIQLPLPVPFKKTTGKQTEKTASDDNKQRKAIKRESAAANADTS
DKEQTEENDVKEEDAKRQRVKEVDEIANDTSDNEVKNEKEDNPEELDDCAVDALRVRIVT
HQLVSPESCTHEVAAHPDQEYIPLQPFTGVPAKQYPFVLDPFQKQAILCIDNSQSVLVSA
HTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFEDVGLVTGDVTINPS
ASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVRYVF
LSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEE
NFTTAMAVLANAGEAAKGDQKGRKGGIKGHNEGQTNIFKIVKMIMERHFAPVIIFSFSKK
DCEVYAMQMAKLDFNTVDEKKLVDEVFKNAMDVLSEDDRRLPQVENVLPLLRRGIGIHHG
GLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWISSGEY
IQMAGRAGRRGLDDKGIVILMIDEKVSPVVGREIVQGQADTLNSAFHLTYNMVLNLLRVE
EINPEYMLERSFYQFQNQATLPGLYDQVQQKTQQLEKIKIKDEHNIASYHNIRDQLEIYG
NKYREWMTKPQYLASFLQPGRLVKVSAGKHEYDWGLVLNFKRKQDLNRKNPLESEPGIVI
DVLLHVSEESAKTGDTEPCPPNERGCMEVVPVSNSLITQISSIRVYFPSDLRTADNRRAV
LKTIQEAKKRFPLGPPLLHPIKDMNIKDGEFRKIMDTIAQFEQLLEAHPLHKSPELDRVH
KRYIEKLKLQNEVKDLKAELKAARSLLQMDELKFRKRVLRRMGYCKPGDVIEFKGRVACE
LSSADELLITEMIFNGVFNDLTAPQAVALLSCFVCDEKSSEAPKSATELSGPLRSLQSLA
RRIAKVSTECKLNLDEESYVEKFKPYLMDVVLAWCNGSSFLNVCKMTDIFEGSIIRCMRR
LEELLRQLCQASKTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggatatagaagagttatttgagtgctttaaggagcagccgtctcaaagtatacagtta
ccgttgcccgtaccctttaaaaagacaacaggaaaacagacagagaaaactgcgtcagat
gacaacaaacagcgaaaggcgatcaaacgcgaatctgctgcagctaatgcagataccagc
gacaaggagcaaactgaagaaaatgatgtaaaggaagaggatgccaagcgtcagcgtgta
aaagaagtagacgaaattgctaatgatacctcagacaacgaggtgaaaaatgaaaaagag
gacaatccagaagagttggatgattgcgcagtggacgccctgcgcgttcgtattgtcact
catcagctggtgtcgcccgaatcctgcacacacgaggtggccgcccatcctgaccaggag
tatattcccttgcagccgttcacgggcgtgcctgctaagcaatacccgttcgtgctggat
ccattccaaaagcaggcaattctctgcattgacaactcgcagagcgtcctggtgtcggcc
cacacatcggcgggcaagactgtggtggcggaatatgccattgccaagtcgttggctgcc
aagcagcgcgtcatttataccactcccattaaagcgctctcaaatcagaagtttcgcgag
ttcacagatgagtttgaggatgttggtctggtcacgggcgatgttaccatcaatccctcc
gcctcctgtctgataatgacaacagaaattctgcggaatatgctgtaccgcggcagcgaa
ataatgcgcgaggtgggctgggtgatcttcgacgagattcattatatgcgtgacaaggag
cgtggagtggtgtgggaggagacactcatcctattgcccgacaatgtgcgctacgtcttt
ctctcggccaccataccgaatgctcgacagtttgccgaatgggtttgccacctgcacaag
cagccctgccatgtggtctacacggattaccgacccacgccgctgcagcattacatcttc
ccagctggaggcgacggcatccacttgatcgtggacgagaagggacagttcaaagaggag
aactttaccacagcaatggcggtgctggccaacgcaggtgaggcagcaaagggcgatcag
aagggtcgcaagggtggcatcaagggccacaatgaaggtcaaacaaacattttcaagatt
gtcaagatgattatggagcgtcactttgcgcccgtcattatcttctcgtttagcaagaag
gactgtgaggtgtacgccatgcaaatggccaagctggactttaatacggtcgacgagaag
aagctggtggatgaggtctttaagaatgccatggatgtgctctcggaggatgatcgtcgc
ctgccgcaggtggagaatgtgctgccattgctgcgtcgtggcattggcatccatcacggc
ggactgctgcccattctcaaggagaccattgagattctgtttggcgagggcctgatcaag
gcgctcttcgcgacagagacttttgccatgggcctgaacatgccggcgcgtacagttctg
tttacggcgccgcgcaaattcgatggcaaggacttccgctggatcagctctggcgagtat
atccaaatggctggacgtgctggtcgtcgcggtctggatgacaagggcatcgttatactg
atgattgatgagaaggtctccccggtggtggggcgtgagattgtgcagggccaagcagac
actcttaactcggccttccatctcacctacaatatggtgttaaatctgttgcgcgtggag
gaaatcaacccggagtatatgctcgagcgcagcttctatcagttccaaaaccaagccaca
ctgcccggcctatacgatcaggtgcagcagaagacacagcagctggagaaaattaagatc
aaggacgagcacaatatcgcctcctatcataacatccgcgaccagctcgagatctacggc
aacaagtaccgcgagtggatgaccaagccacagtatctggcgtcctttctgcagccaggg
cgactggttaaagtctcggctggcaagcacgagtatgactggggtctggtattgaacttt
aagaggaagcaagatctaaatcgcaagaacccattggagagtgaaccgggcattgtcatc
gatgtgctgctccatgtcagcgaagagtcggccaagacaggcgacaccgagccctgtccg
cccaacgagcgtggctgcatggaggttgttcccgtatccaattccctcatcacccaaatt
agctcgatacgcgtctactttcccagcgatctgcgtacggctgacaatcgccgggccgtg
ctgaagaccatacaggaggcgaaaaaacgattccccctcggaccacccttgctccatccc
atcaaggacatgaacattaaggatggcgaattccgcaaaatcatggacacaatcgcacag
ttcgagcagttgctcgaggcgcatcccttgcacaagtcgccggagctggatcgcgttcac
aagcggtacatcgagaagctaaagctgcagaatgaggtgaaggacctgaaggcagagcta
aaagctgcccgcagcttgctgcaaatggacgagttgaaattccgcaaacgtgtgctccgg
cgcatgggctactgtaagccgggcgatgtcatcgagttcaaaggtcgcgttgcctgcgag
ctgagctccgcggatgagctgcttatcactgaaatgatattcaatggtgtcttcaacgac
ctcaccgctccgcaagctgtggcgctgctctcctgtttcgtatgcgacgagaagtccagc
gaggcgccaaagagcgccaccgagctgtccggcccgttgcgctccctgcaaagcttggcg
cgtcgcattgccaaggtgtccaccgaatgcaagctgaatctggatgaggagagctatgtg
gagaagttcaagccctacctaatggacgttgtgttggcctggtgcaacggctccagcttc
ttgaatgtctgcaagatgacggacatctttgagggctccatcattcggtgcatgcggcgt
ctggaggagctgttgcgccagctgtgccaagcatccaagacgattggcaacacagatctg
gagaataagttctccgaaggcattcgactgctcaagcgcgacattgtctttgctgcctcg
ctatatctatag
DBGET
integrated database retrieval system
