Oceanidesulfovibrio marinus: E8L03_04295
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Entry
E8L03_04295 CDS
T06743
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dms
Oceanidesulfovibrio marinus
Pathway
dms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E8L03_04295 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dms03400
]
E8L03_04295 (mfd)
Enzymes [BR:
dms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E8L03_04295 (mfd)
DNA repair and recombination proteins [BR:
dms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E8L03_04295 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
RecG_dom3_C
SecA_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
QJT08191
LinkDB
All DBs
Position
complement(966076..969618)
Genome browser
AA seq
1180 aa
AA seq
DB search
MLPAELKEFARTRRGVIRVMKSGAAGRAFVAQHLLESGASPVVVVRGTEQLAQVRAVLSL
AGQSGGRQDAWIELPGYAAISPFADDSRGGRERALWARRMAALYAMAQSDKPRGILLTVD
NLLPKWPPRSVLEANTLDLIKGEDLSTDIMLEQAIAWGYERVGMVTRPGELSRRGDILDV
FCPSYAFPLRLEFFGDTLEDMRLFDPATQRAKESLHEATLIPVTPSVADPEMVRAARKRV
ERLEKDGVLDAATAKAAAIALEDDPGAVHPGLFYEDACFLEEWLPRDRVFLLGATEVLDT
VLEEALWSWELTIRERLGGADAFAEEEDEEGETVSAGGLRPVVARSRNEARAVLEAAGSV
VFEELVMGIDRKGVDLPERRVENFNELMAVLAGEEARDNAERDRPWQALLALINQLRASH
AQTILTFSREQARKKFLSLAEADGLRPRTAYSQDERGLYALVSDFRGGADLPWRQTVILG
EDVIQPRAVGRPAPSRRDFVGLKSFDDLKAGDLLVHREYGLARFQGLIRLDLGDVGNDYL
LLHYQGDDKLYLPVDRLNLVQRYKGPEGIDPSLDRLGGIGWVRTREKARKAVEKIAQDLV
EMYAYRKIAKGYSYDPPNEMYREFEASFGFEETPDQERAINDVLADMEKPEPMDRLVCGD
VGFGKTEVAMRAAFRAALDGRQVAVLCPTTVLAEQHYQNFRSRMKEFPVNVAMLSRFVTK
ESQRTIVEAAKRGQVDILIGTHRMLSKDVQIPGLGLLVLDEEQRFGVKHKERLKSLKKQV
DVLTLTATPIPRTLQLSLSGVRSLSVIETPPRDRKPVETAILNRDPMMLKAILKTELERK
GQVFWVHNRVQGLEQVRDFVVKLVPDARVGMAHGQMAERTLEETMHAFWHGELDVLVCTS
IIESGLDFPRANTLVVDQAHMFGLGQLYQLRGRVGRSDRQAYAYFVTPDQDRLSDTVRKR
LRVIMDLDYLGAGFQVAMEDLRLRGAGNILGESQSGHIAKIGLDLFLEMLEMEVARLKGG
PIQQEVETELVIGFEANIPEEYIADAGERLTYYKSLSSARDPEVRRDLQAEIRDRYGPLP
TPLINFLSVLEIKALCGSLGVEKAELFESMVRLTFLTEGSPVAPEELVAWTVRHEGRAKL
SPPATLELRLEEKGDIKARLEEAGTQLAALQPGEAAARTS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgctaccagcagaactcaaggaattcgcccgcaccaggcgcggcgtgatccgcgtaatg
aaaagcggcgcggccggtcgtgcgttcgtggcccagcacctgctggagtccggcgccagc
cctgttgttgtggtgcgcggcaccgagcagctcgcccaggtgcgcgccgtgctctccctg
gcagggcagagcggcggccggcaggatgcgtggatcgagctgcccggatacgcggccatt
tcgccctttgccgacgacagccgcggcggacgcgagcgcgccctgtgggctcggcgcatg
gccgcgctctacgccatggcgcagtcggacaagccgcgcggcattctgcttaccgtggac
aacctgctgcccaagtggccgccgcggtccgtgctggaggccaacaccctggatctgatc
aagggcgaggacctttccaccgatatcatgctggagcaggccattgcctggggctacgag
cgcgtgggcatggtcacccggccgggcgagctctcccgccgcggcgacatcctcgacgtc
ttctgtccgtcctacgcctttcccctgcggctggagttcttcggcgacaccctggaggac
atgcggctcttcgatcccgccacccagcgcgccaaagagagtctgcacgaggccacgctt
atcccggtgacgccctccgtggccgacccggagatggtccgcgccgccagaaagcgcgtg
gaacggctggaaaaggacggggtcctggatgcagcaacggcaaaggccgctgccatcgcc
ctggaggatgaccccggcgccgtccaccccggactgttctacgaggacgcctgctttctg
gaggagtggctgcccagggaccgcgtcttcctgctcggagccaccgaggtgctggacacc
gtgctggaggaggcgctctggagctgggagctcaccatccgcgagcgcctgggcggagcc
gacgcctttgccgaagaagaggacgaggaaggcgagaccgtgtccgccggtggattgcgg
cctgtggttgcacgcagccgcaacgaggcgcgcgccgtgctggaggctgccggcagcgtg
gtctttgaagagctcgtcatgggcatcgaccgcaaaggtgtggatctgcccgagcggcgc
gtggagaacttcaacgagctcatggccgtgctcgccggggaggaagcgcgcgacaacgcc
gagcgcgatcggccctggcaggcgcttctggcgctcatcaatcagcttcgcgccagccat
gcccagactatcctgacgttttccagggagcaggcccgcaaaaagtttctctccctggcc
gaggcggacgggctgcggccgcgcaccgcgtactcccaggacgagcgcgggctctacgcc
ctggtctcggacttccgcggcggcgccgacctgccgtggcgtcagaccgttatccttggc
gaagacgtcatccagccgcgggccgtgggccggccggctccctcgcggcgagacttcgta
ggtctcaagagcttcgacgatctcaaggccggcgacctcctggtgcatcgcgagtacggc
ctggcgcggttccaggggctcatccggctcgacctgggtgatgtgggcaacgattacctg
ttgctccactaccagggcgacgacaaactctacctgccggtggatcggctcaacctggtg
cagcgctacaaagggccggaaggcatcgacccctcgctggaccgcctgggcggcatcggc
tgggtgcgcacgcgtgagaaagcgcgcaaggccgtggagaagatcgcccaggatctggtg
gagatgtacgcctaccgcaagatcgccaagggctacagctacgatccgcccaacgagatg
taccgggagttcgaggcatccttcggtttcgaggagacgccggaccaggagcgcgccatc
aacgacgtgctcgcggacatggagaagcccgagcccatggaccggctggtctgcggcgat
gtgggcttcggcaagaccgaggtggccatgcgcgcagccttccgcgccgccctggacggc
cgccaggtggccgtgctctgccccacaacggtgctggccgagcagcattaccagaatttc
cgctcccgcatgaaggagttcccggtcaacgtggccatgctcagccgctttgtcaccaag
gagtcccagcgcaccatcgtggaggcagccaagcgtggacaggtggacatcctcatcggc
acgcacaggatgctctccaaggacgtgcagattcccggcctgggcctgctggtcctggac
gaggagcagcgcttcggcgtgaagcacaaggagcggctcaagtcgctcaagaagcaggtg
gacgtgctgaccctgacagccactcccattccgcgcacgctgcagctttccctttccggc
gtacgctcgctctcggttatcgagacgccgccgcgcgatcgcaaaccggtggagacggcg
attctcaaccgcgaccccatgatgctcaaggccatcctcaagaccgagctggagcgcaag
gggcaggtgttctgggtgcacaaccgcgtgcaggggctggagcaggtgcgcgacttcgtg
gtcaagctcgtgccggacgcgcgtgtgggcatggcccacggccagatggccgagcgcact
ttggaggagaccatgcacgccttctggcacggcgagctggatgtgctggtctgcacctcc
atcatcgagtccggcctggatttcccccgcgccaacaccctggtggtggaccaggcgcac
atgttcggcctggggcagctctaccagctccggggacgggtgggccgctcggaccggcag
gcctacgcctacttcgtcacgccggatcaggaccggctctcggacacagtgcgcaagcgg
ctgcgggtgatcatggacctggactacctgggcgcgggcttccaggtggccatggaggat
ctacgcctgcgcggcgctggcaacatcctgggcgagtcgcagtccggccacatcgccaag
atcggcctggacctcttcctggagatgctggagatggaggtggcccggctcaagggcggc
cccatccaacaggaagtggagacagagctcgttatcgggttcgaggccaatattcccgaa
gaatacattgccgacgccggcgagcggctgacatattacaagagtctgtcctcggcgcgg
gacccggaggtgcggcgcgatttgcaggccgagatccgcgaccgctacgggccgctgccc
acgccgctcatcaacttcctttccgtgctggagatcaaggcgctgtgcggctccctgggc
gtggaaaaggccgagctgttcgagtccatggtgcggcttacgtttcttacagaaggttca
cctgtggctccggaggagcttgtggcctggactgtgcggcacgaaggccgcgccaagctt
tcgcccccggccaccttggagttgcgcctggaagaaaagggagatatcaaggcccggtta
gaggaagccggcacgcagctggccgctctccaaccgggtgaagcagccgcccgaacctcc
tga
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