Oceanidesulfovibrio marinus: E8L03_18420
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Entry
E8L03_18420 CDS
T06743
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dms
Oceanidesulfovibrio marinus
Brite
KEGG Orthology (KO) [BR:
dms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E8L03_18420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dms03400
]
E8L03_18420
Enzymes [BR:
dms01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E8L03_18420
DNA repair and recombination proteins [BR:
dms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E8L03_18420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QJT10770
LinkDB
All DBs
Position
complement(4208876..4209802)
Genome browser
AA seq
308 aa
AA seq
DB search
MTKLQFGPYSVSFDKDDKVLYPAHDGQPAVTKADVIIYYKDIAGVMLPHAGGRPVTLRRF
PDGIESSGFYMQEAQDYFPDWIERVDAKRHDGSTIHHAVANRAADLAYLASLGTLEFHTW
LSHAKDIRTPDWIVFDLDPPGKDEHAFTMVRAAALDIRGLLDELGLASFVKLTGSKGLHV
LAPITPEEDFDDVRAFARDAAELLAARKPDDYTTEQRKEKRKGRLYLDMMRNAYAQHAVA
PYSLRPLPGAPVAAPLDWSEVEDASLTPRSVTIHTIFRRLGQKDDPWKDLARHRRSLAKA
REKLEAQL
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagctccagttcggtccctactccgtgtctttcgacaaggacgacaaggtcctc
tacccggcgcacgacggccagcccgccgtgaccaaggccgacgtcatcatctactacaag
gacatcgccggggtcatgctgccccacgccggtggccggcccgtcaccctgcggcgcttt
ccggatggcatcgaatcctccggcttctacatgcaggaggcgcaggattactttccggac
tggattgagcgcgtggacgccaagcgacacgacggctccaccatccaccacgccgtggcc
aaccgcgcggccgacctcgcctacctggccagcctcggcaccctggagtttcatacctgg
ctctcccatgcgaaagacatccgcacgccggactggatcgtcttcgacctcgacccgccc
ggcaaggacgagcacgccttcaccatggtgcgcgccgcggccctcgatatccgcggactg
ctggatgagctcgggctggcctcgttcgtgaagctgaccggctccaaggggctgcacgtg
ctcgctcccataacaccggaggaggacttcgacgatgtccgggcgttcgcccgggatgcg
gccgagttgctggcagcacgcaagccggacgactacaccacggagcaacgcaaggagaag
cgcaagggccggctctacctggacatgatgcgcaacgcctacgcccaacacgccgtggcg
ccgtactcgctgcggccgctgcccggcgcgccggtggccgcgccgctggactggagcgag
gtggaggacgcctcgctcaccccgcgctccgtgaccatccacaccattttccgccgcctg
ggccagaaggacgacccctggaaggacctcgcgcgccaccgccgcagcctagcgaaggcg
cgggagaagctggaggcgcagctctga
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