Desulfitobacterium metallireducens: DESME_11390
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Entry
DESME_11390 CDS
T03599
Name
(GenBank) DNA polymerase LigD, polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dmt
Desulfitobacterium metallireducens
Pathway
dmt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DESME_11390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmt03400
]
DESME_11390
Enzymes [BR:
dmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DESME_11390
DNA repair and recombination proteins [BR:
dmt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DESME_11390
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHF07541
UniProt:
W0EEN1
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All DBs
Position
complement(2227880..2228761)
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AA seq
293 aa
AA seq
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MKVDGHILSVSHLTKVYFPEIGLTKGEILKYYTDMAPYILPHIARSPFVMVRFPEGIHGE
FFYQKECPAQAPEWVTRFEDPFSQSGLTYVVCDQLSTLMYLINLGCIEIHAWASTIDYPD
RPEWAVFDLDPDPPSGITEAYQVARWLGEILNELKINFLVKTSGSKGIHILVPLIPQFSY
EEVQRGVEGVCRFLLRQRPEACTLERSILKREGKIYLDYIQNGRGRTMAGIYSIRPTIQG
QVSTPLLREEVLAGEDPSQFTVRNLKKRIDKVGDLSRIMKEKMDFNKILHYFT
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagtcgacgggcatattttgtccgtaagtcatttaactaaagtgtattttccagaa
ataggccttacaaaaggagaaattctgaaatattatacggatatggctccgtatatctta
ccccatatagcgcgtagcccttttgttatggtacgctttcctgaaggaattcacggcgaa
tttttttatcaaaaagagtgtccagcacaagctccagaatgggtaacccgctttgaggat
ccgttctctcaatccggtttgacctatgttgtttgtgatcaattatcgacgctaatgtat
ttgatcaatctggggtgcatcgaaatacatgcttgggcttcgacgattgattatcccgat
cgaccggagtgggcagtatttgatctcgatccagatcctccctcggggataacagaggct
tatcaggtggctcgttggctaggggaaattctaaatgaactcaaaattaactttttggtg
aaaacgtctggttcaaaaggaatccacatattagtgcctcttattccccaattctcgtat
gaggaggtccagcgtggtgtagaaggtgtctgccgatttttgttaagacagcgcccagaa
gcttgtacgctagaacggagtattctcaaacgggagggaaaaatctatcttgattatata
caaaatggtcgagggagaacgatggcaggaatttatagcattcgcccgactattcaaggt
caggtttcgacgccgctgctcagggaagaagtcctggcaggggaagatccatcgcagttt
accgtgagaaatttaaagaaacggattgataaagtcggagatttgagccggattatgaaa
gaaaagatggactttaataaaatcctacactatttcacctaa
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