Dehalococcoides mccartyi CG4: X793_04130
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Entry
X793_04130 CDS
T03648
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dmy
Dehalococcoides mccartyi CG4
Brite
KEGG Orthology (KO) [BR:
dmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
X793_04130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmy03400
]
X793_04130
Enzymes [BR:
dmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
X793_04130
DNA repair and recombination proteins [BR:
dmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
X793_04130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
Motif
Other DBs
NCBI-ProteinID:
AII59527
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Position
771852..772403
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AA seq
183 aa
AA seq
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MPASPLEEYNRKRDFNKTAEPSGAKSPPSANPVFVVQKHLASHLHYDFRLEIDGVLKSWA
VPKGPSASPKEKRLAVATEDHPMQYASFEGVIPAGEYGAGKVIVWDRGTFQNLKDGKTLE
ESYSTGHLVINLQGEKLKGGYSLLRTKMGWLMVKMEDEFARPLSDILDEQPASVISGRLV
EEI
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccagccctctggaagaatataaccgcaaacgtgattttaataaaaccgccgaa
ccgtcaggggcaaaaagcccgccatccgctaaccccgtgtttgttgtgcaaaaacatctt
gccagccatttgcattatgatttcaggctggaaattgacggtgtattaaagtcatgggct
gtgcccaaaggaccgtctgccagtcccaaagaaaaaaggctggcggttgccaccgaagac
caccccatgcagtatgcctcttttgaaggggtaataccggccggagaatatggtgccggt
aaagttattgtctgggacaggggcacttttcagaacctgaaagacggtaaaacactggag
gaatcttacagcacagggcatctggttataaaccttcagggtgaaaaacttaaaggcggt
tattcgcttttgcggactaaaatgggctggctgatggtcaagatggaagacgagtttgcc
cgccctttgtcagatatacttgacgaacagcctgcttcagtaataagcggcaggctggta
gaagaaatttag
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