Dromaius novaehollandiae (emu): 112992322
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Entry
112992322 CDS
T07572
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dne
Dromaius novaehollandiae (emu)
Pathway
dne03013
Nucleocytoplasmic transport
dne03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dne00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112992322 (UPF1)
03015 mRNA surveillance pathway
112992322 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dne03019
]
112992322 (UPF1)
Enzymes [BR:
dne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112992322 (UPF1)
5.6.2.5 RNA 5'-3' helicase
112992322 (UPF1)
Messenger RNA biogenesis [BR:
dne03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112992322 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
112992322 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112992322
NCBI-ProteinID:
XP_025971097
Ensembl:
ENSDNVG00000012088
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
LNTDFVFQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGI
HDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC
RNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSE
QEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGP
LVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKG
DLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALK
TFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLS
LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKS
REAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLM
NADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAA
DRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPD
QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ
GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRE
SLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGM
ISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFAIP
GTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
ttaaacactgactttgtgtttcaggttaatggacctgatggcattctacagaatggagct
gtggatgataatgtagctaaaaccagtcagcttctggcagagctgaattttgaagaagat
gaggaagatacctattatacaaaggaccttcctgtgcatgcttgcagctactgtggtatc
catgacccagcttgtgtggtttactgcaacaccagcaaaaaatggttctgtaatgggcgt
ggaaatacatctggcagccacattgttaatcatctggtgagagcaaagtgcaaagaggtt
actctccacaaagatgggcctctgggagagactgtcttggaatgttataactgtggatgt
cgtaatgtgtttctcctgggctttattccagcgaaggcagactctgtggttgttttgctg
tgcaggcaaccatgtgccagtcagagcagtttaaaggatattaactgggacagttcacag
tggcagcctcttatccaagaccgctgtttcctttcatggctggtaaagattccatctgaa
caggaacagctgagagcacgtcagattacagctcaacagattaacaaactggaagaactt
tggaaggaaaatccatctgcaacccttgaggatttagaaaagcctggtgttgatgaagaa
ccgcagcatgtcctacttagatacgaagatgcttatcagtaccaaaatatatttggtcct
ctagtcaagcttgaggcagactatgacaagaaactcaaggagtctcagacccaagataac
atcacagtcagatgggacttgggcttgaacaagaaaagaattgcttatttcactttgccg
aagactgattcagatatgcgtcttatgcaaggagatgagatctgcttgagatataaggga
gacctggcccctttatggaagggaatcggtcacgttatcaaagttcctgataattatggt
gatgagatagccatcgagctaagaagcagcgttggagcacctgtggaagttactcataac
ttccaagtggattttgtatggaagtctacttcatttgacagaatgcagagtgctttaaaa
acgtttgctgtggatgagacttcagtgtctgggtacatctatcacaagctgttaggccat
gaggtagaagatgtaattattaaatgccagttgccaaagcgctttacagcacaaggactt
cccgatctcaaccattctcaggtttatgctgtgaagactgtcttgcagcgtcctctgagt
cttattcagggtccccctggtacaggaaaaacagtgacgtcggccacaattgtctatcat
ctggctagacagggcaatgggcctgtgttagtctgtgctccaagtaacatagctgtagat
cagttgactgagaagattcatcaaactggactgaaagtggttcgtctgtgtgctaaaagt
cgtgaggcaattgactctcctgtatccttcctggcattgcacaaccagatcagaaacatg
gatagcatgccagagcttcagaaactgcagcagcttaaagatgaaactggagaactgtca
tctgctgatgagaaacgttaccgtgcactgaaacgaacagctgagcgtgaattacttatg
aatgcagatgtgatctgttgcacatgtgtgggagctggtgatccaagacttgcaaaaatg
cagttccgctccattctgattgatgaaagcacacaggctactgagccggagtgtatggtg
ccagttgtcctgggagcaaaacagctcattcttgtaggtgaccactgtcagcttggtcct
gttgtgatgtgtaaaaaagctgcaaaggctggcctgtctcagtccctctttgagaggctt
gtggtgctggggatccgtccgattcgccttcaagtgcagtatcgcatgcatcctgcactg
agtgcttttccatccaatatcttctatgagggttcactccagaacggtgttactgcagcg
gaccgtgtgaaaaaaggatttgatttccaatggccacagccagataagccaatgtttttc
tacgttacgcaaggacaggaagaaattgccagttcaggcacctcttacttgaacaggacg
gaagcagccaacgtggagaagataactacaaagttattgaaagctggtgccaaaccagat
cagattggcattatcactccttatgagggtcaacgatcctatctggtgcagtacatgcaa
ttcagtggttccttgcatacraaactctaccaggaagtggaaattgcgagtgtggatgcc
ttccagggacgagagaaggactttattatcctttcttgtgtaagggccaacgaacaccaa
ggaataggatttctgaatgaccccaggcgtcttaatgtggctcttacaagagcaaggtay
ggagtaattattgttgggaacccaaaagcactgtctaagcagccactttggaatcacctg
ctgaactattacaaggagcagaaggttctrgtggagggaccactgaataacctccgggaa
agccttatgcaattcagcaagccccggaaacttgtcaataccatcaatccaggtgcccgt
tttatgacaaccgccatgtatgatgcacgtgaggctattattccaggatctgtctatgac
cggagcagtcaagggcgcccgtccaacatgtacttccaaacccatgaccagatcgggatg
attagcgctggccccagccacgtcactgctatgaacattcctatccctttcaaccttgtg
atgccaccgatgcccccgccgggatactttggccaggctaacggaccggctgcaggacgt
ggggcaccaaaaggaaagactggtcgtggtgggcgtcagaaaaatcgttttgcgattcct
ggaactagtcagtcaaaccttccaaatagtcaagcaagccaagatgtggtgtcccagcct
ttctcccagggtccactgactcaagggtatatctccatgagtcagccatcacagatgagt
cagcctgggctctcccaaccagaattatcacaggacagttaccttggtgatgagtttaaa
tctcagatcgatgtggcgctgtcacaggactctacttaccagggtgaacgtgcatatcaa
catggcggagtgacgggactgtcacagtattag
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integrated database retrieval system
