Dromaius novaehollandiae (emu): 112995498
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Entry
112995498 CDS
T07572
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
dne
Dromaius novaehollandiae (emu)
Pathway
dne03030
DNA replication
dne03410
Base excision repair
dne03420
Nucleotide excision repair
dne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112995498 (LIG1)
03410 Base excision repair
112995498 (LIG1)
03420 Nucleotide excision repair
112995498 (LIG1)
03430 Mismatch repair
112995498 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dne03032
]
112995498 (LIG1)
03400 DNA repair and recombination proteins [BR:
dne03400
]
112995498 (LIG1)
Enzymes [BR:
dne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112995498 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
112995498 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
112995498 (LIG1)
DNA replication proteins [BR:
dne03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
112995498 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
112995498 (LIG1)
DNA repair and recombination proteins [BR:
dne03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
112995498 (LIG1)
NER (nucleotide excision repair)
Other NER factors
112995498 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
112995498 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
112995498
NCBI-ProteinID:
XP_025976306
LinkDB
All DBs
Position
Unknown
AA seq
868 aa
AA seq
DB search
MQRRITAPEQGEDPAQDPPSPGREDRDGQDPGSLSCLPAAASPDGSSPDSASSAEESPSA
PDGSSASLPGIPRRRTARKQVPKRKIKLASCVENGHAAEPDPKRWREEPGDGCESDSPET
QEVRDHSSEEAKEAEDGNEDRGAQTSELPKPSKAVADFFAPRKGSRTKAEENAAPKMPAP
KGSAPASVEGTNGTASSPSQAAELLDPAQYNPSKSSYHPIHDACWAPGQRVPYLXVARTF
ERIEEVSARLKNIETLSNFLRSVVALSPSDLLACVYLCLNRLGPAYEGLELGIGESILMK
AVAQATGRQLEKIKSEAQEKGDLGLVAESSRSNQRTMFAPPKLSAAGVLSKLQEMARMTG
NASMNKKIDIIKGLFVACRHSEARYIARSLSGKLRIGLAEQSVLAALAHAVSLTPPAQGW
PPAVVDASQGKSAEARKAWLEERSQILKQTFCELPNYAAIIPVLLEHGLESLPLHCKITP
GIPLKPMLAQPTKGVGELLKRFEEAAFTCEYKYDGERAQIHILEDGAVYVYSRNQENNTS
KYPDIVTRIPKVKKASVRSCILDAEAVAWDPEKKQIQPFQVLMTRKRKDVEAAEIKVQVC
LYAFDMLYLNGESLVKEPFSKRRRLLRESFVETEGEFLFATSMDACSTEEISEFLDQSIK
DSCEGLMVKTLDVDATYEIAKRSHKWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRVGMYG
GFLLACYDEESEEYQSICKIGTGFTEESLEKHYSFLKDHVLAQPRPYYRWDSGAAPDHWL
AAVQVWEVKCGDLSISPVYKAAVGLVDEEKGISLRFPRFLRVREDKKPEEATSSSQVAEL
YKKQQQIQNQQQIQNQQLAEKGEDEDFY
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcgcatcacggcgccggagcagggcgaggaccccgcgcaggaccccccgtcc
ccaggccgtgaggaccgtgatgggcaggaccccggttccctgtcctgtctgccggctgct
gcgtccccggatggctcttctcccgacagcgcctcctcggctgaagaaagcccctcggcc
cctgatggctcctccgcctccctccccggcatcccccggcgcaggacggctcggaagcag
gtccccaagcgcaaaataaagctggcgagctgtgtggagaacgggcatgccgcggagccc
gatcccaagcggtggagggaagagccgggagacggatgcgaatcagacagcccggagaca
caggaggtgagggatcacagctcagaagaggctaaggaagcagaagacggcaacgaggat
aggggagcccagacatcggagctgccaaagcccagcaaagccgttgctgacttctttgcc
cccaggaaggggtcaaggacraaggcagaggaaaatgcggccccgaagatgccagccccg
aagggttcagctcccgccagcgttgaaggcaccaacgggactgcaagcagtccctcccag
gctgccgagcttctggatccagcccagtacaacccctccaagagcagctatcaccccaty
cacgatgcctgctgggctcccgggcagagagtcccctacctggytgtggctcgtaccttt
gagcgcattgaggaagtctctgcccgcctgaagaacattgagaccctgagcaatttcctt
cgctcagtcgttgccctgtcaccgtctgacctcctggcctgcgtctacctctgcctgaac
cgcctgggccctgcctacgaggggctggagctgggcatcggggagagcatcctcatgaag
gctgttgcgcaggccacaggycgccagctggagaaaatcaagagcgaagcccaggagaag
ggagatctggggctggtggccgagagcagccgcagcaaccagcggaccatgttcgcgccg
cccaagctgagcgctgccggggtcctcagcaagctgcaggagatggccaggatgacgggc
aacgcttcaatgaacaagaaaattgatatcatcaaggggttgtttgtggcctgtcgccac
tccgaggctcgctacattgcccggtcgctgagcgggaagctgcgcatcggcctggcggag
cagtcggtgctggcagctttggcccacgccgtctcgctgacccccccggcrcaagggtgg
cccccagccgtggtggatgccagccagggcaagtctgctgaagcacgtaaagcctggctg
gaagagcggagccagatcctcaagcagactttttgtgagctgccgaactatgccgccatc
attcccgtgctgctggagcacgggctggagagcctgcccctgcactgcaagatcacccca
gggatccccctgaagcccatgctggcccagcccaccaaaggcgtcggggagctcctgaaa
cgcttcgaggaggcggccttcacctgcgagtacaagtacgacggcgagcgggcccagatc
cacatcctggaggacggggccgtgtacgtctacagccgcaaccaggagaacaacacctcc
aagtaccccgacatcgtcacccgcatccccaaggtgaagaaggccagcgtgcggtcgtgc
atcctggatgcagaagctgtcgcgtgggacccrgagaagaagcaaatccagccgttccag
gtgctgatgacacggaagaggaaggacgtggaggctgccgagatcaaagtgcaagtgtgc
ctgtatgccttcgacatgctgtacctcaatggggagtcgctggtgaaggagcccttctcc
aagcgccgccggctgctgcgygagtccttcgtggagacggagggcgaattcctcttcgcc
acctccatggatgcctgcagcactgaggaaatctccgaattcttggaccagtccatcaag
gactcctgtgagggcctcatggtgaagacgctggacgtggatgccacctatgaaattgca
aagcgatcccacaagtggctgaagttaaagaaggattacctggaaggggtgggggacacg
ctggacttggtggtcattggtgcctacctggggaagggcaagcgtgtgggcatgtacggg
ggcttcctgctggcctgctacgacgaggagagcgaagagtaccagagcatctgcaagatc
gggaccggcttcacggaggagagcctggagaagcactacagcttcctcaaggaccacgtc
ctggcccaaccgcggccctactaccgctgggacagcggggcagcgcccgaccactggctg
gcagctgtgcaggtttgggaggtgaagtgcggcgacctctccatctcccccgtctacaag
gcagctgtgggcctggtggatgaggagaagggcatctcgctgcgcttcccccggttcctg
cgcgtgcgggaggacaagaagccagaagaggccaccagcagctcccaggtggctgagctg
tacaagaagcagcagcagatccagaaccagcagcagatccagaaccagcagcttgccgag
aaaggggaggacgaggacttttactaa
DBGET
integrated database retrieval system
