Dermacoccus nishinomiyaensis: HX89_11205
Help
Entry
HX89_11205 CDS
T03223
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dni
Dermacoccus nishinomiyaensis
Pathway
dni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HX89_11205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dni03400
]
HX89_11205
Enzymes [BR:
dni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HX89_11205
DNA repair and recombination proteins [BR:
dni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HX89_11205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
TFIID_30kDa
Motif
Other DBs
NCBI-ProteinID:
AIF41414
UniProt:
A0A075JHM9
LinkDB
All DBs
Position
complement(2405222..2408851)
Genome browser
AA seq
1209 aa
AA seq
DB search
MPEAAHLPLAPLLTRVCADESVKRLLALAADESLVDIAAAAGLRAPLVAALLQTGGDAAG
PMLVVTATGREADDMATALRNFVDYDDVAEFPSWETLPHERMSPRSDTVGRRLAVLRRLR
HPEAGGTYGPVRVVVASVRALMQPMAKGLGDLEPVSLAAGDERPLEDIVEALVAAAYTRV
DMVERRGEFAVRGGILDVFPPTEDHPVRLEFWGDTVEEIRWFKVADQRSLEVNPHGLWAP
PCRELLLTPEVRERAAELAPSLLGVADMLTKVSEGIAVEGMESLMPALLPAGMETLIDVL
PDAARVVLVDPERVRTRAHDLVSTSQEFLEASWTNAAAGNAVPVDLRGVLDGASYRSLLE
LREHALATAHPWWSFSSFAADDELHEFLEDDLPGTRVTIDSQDVPNYRGDTERASAEVAA
HVAAGRSVAVVTDGPGFAKRVTQVFAEHDLAARPMTQVAPGVEVATGSLGRGFEMPAAGL
VVLTEADLTGSAGTASTKDMRRMPSRRRNVVDPLQLKPGDHVVHEQHGVGRFVEMMQRTV
GGATREYLVLEYAASKRGQPGDRLFVPTDQLDQVTRYVGGEMPTLSKMGGSDWAATKSKA
RRHVKQIAGELIRLYSARQATPGHAFAPDTPWQRELEDAFAYVETPDQLSSIEEVKADME
KTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVKQHYQTFAERYAGFP
VKLASLSRFQSDKEAREVLAGLKDGSIDLVIGTHRLLSKEIEFKDLGLVIVDEEQRFGVE
HKEQLKQMRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGAYDEKQ
LTAAIRRELMREGQVFYVHNKVGSIEKQAARIRVLVPEARVATAHGKMEEARLEEVVVDF
WERKFDVLVSTTIVETGLDIANANSLIVERADQLGLSQLHQLRGRVGRGRERAYAYFMFP
AEKPLTETAHDRLQTIASNTDLGAGMQIAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
MVGEAVADYRGDDTSSMPVEIKIELPVDAHLPHEYVPGERLRLEAYKKLASVENEAALDE
IIAELKDRYGEPPAPVLNLFDVARLRTIARQAGISDIGVQGKYVRFGPVTELRESQQMRL
ERLFPGTLIKTNQERLLVPMPMTKPVAGKPLRDQAILQWAAQLVQAVLLDDIAAAAAAQE
MARAGGARR
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaggccgcccacctgccgctcgcgcccctgctgacgcgcgtgtgcgccgacgag
tccgtcaagcggctgctcgcgctggccgcggacgagtcgctcgtcgacatcgcggccgcg
gccggtctgcgcgctcctctcgtggcggctctgctgcagactggcggcgacgcggcgggg
ccgatgctcgtcgtcaccgcgacggggcgcgaggccgacgacatggcgacggccctgcgc
aacttcgtcgactacgacgacgtcgccgagttcccgtcgtgggagacgctgccgcacgag
cgcatgtcgccgcgttccgacacggtcgggcggcgtctcgccgtgctgcgccgcctcagg
cacccggaagcgggcgggacgtacgggcccgtccgcgtcgtcgtcgcgtcggtgcgcgcc
ctcatgcagcccatggcgaagggcctcggcgacctcgaacccgtgagcctcgccgccggt
gacgagcgcccgctcgaggacatcgtggaagccctcgtggccgcggcctacacgcgcgtc
gacatggtcgagcgccgcggcgagttcgccgtgcgcggtggcatcctcgacgtgttcccg
cccaccgaggatcacccggtgcgcctggagttctggggcgacaccgtcgaggagatccgc
tggttcaaggtggccgaccagcgttcgctcgaggtcaacccgcacgggctgtgggccccg
ccgtgccgcgaactgctgctcacccccgaggtccgtgagcgcgcggctgagctcgcgccg
agcctgctgggcgtcgccgacatgttgacgaaggtcagcgagggcatcgccgtcgagggc
atggagtcgctcatgccggcgctgctgccggccggcatggagacgctcatcgacgtgctg
ccggatgctgcgcgcgtcgttctcgtcgaccccgagcgcgtccgcacccgcgcgcacgac
ctcgtctcgacgtcgcaggagttcctcgaggcgagctggaccaatgcggccgccggcaac
gccgtccccgtcgacctacgaggcgtgctcgacggcgcgtcgtaccgcagccttctcgaa
ctgcgtgagcatgcgctcgcgaccgctcacccctggtggtcgttcagctcgttcgcggcc
gacgacgagttgcacgagttcctcgaggacgacctgccgggtacccgcgtcacgatcgac
tcgcaggacgtgccgaactaccgcggcgacaccgagcgcgcgtccgccgaggtcgcggct
cacgtcgcggccgggcgcagcgtcgccgtcgtgacggacggcccgggcttcgccaagcgc
gtcacccaggtgttcgccgagcacgacctcgccgcacgcccgatgacgcaggtcgccccc
ggtgtcgaggtcgcgacgggttcgctcggccgcggcttcgagatgcccgctgcggggctc
gtcgtcctcaccgaggccgacctcaccggctcggcgggaacggcgagcacgaaggacatg
cgacgcatgccgtcgcgccgccgcaacgtcgtcgacccgctgcagctcaagccgggcgat
cacgtcgtccacgaacagcacggtgtcggccggttcgtcgagatgatgcagcgtaccgtc
ggcggcgcgacgcgcgaatatctcgtcctcgagtacgcggcgagcaagcgcggtcagccc
ggcgaccggctgttcgtgcccaccgaccagctcgaccaggtgacgcgctacgtcggcggc
gagatgccgacgctgtcgaagatgggcggctcggactgggcggcgaccaagtcgaaagcc
cgccgtcacgtcaagcagatcgccggcgagctcatccgcctgtactcggctcgacaggcg
acgccgggtcacgcgttcgcgcccgacacgccgtggcagcgcgagctggaggacgccttc
gcgtacgtcgagacgcccgatcagctctcgagcatcgaagaggtcaaggccgacatggag
aagacggtgcccatggaccgtctcgtctgtggtgacgtgggctacggcaagaccgagatc
gcggtgcgcgcggcgttcaaggcggtgcaggattccaagcaggtcgcggtcctcgtgccg
acgacgctgctcgtcaagcagcactatcagacgttcgccgagcgttacgcgggcttcccc
gtcaagctcgcgtcgctgtcgcgttttcagagcgacaaggaggcgcgcgaggtcctcgcg
gggctcaaggacggctcgatcgacctcgtcatcggaacgcaccggttgctgagcaaggag
atcgagttcaaggatctcgggctcgtcatcgtcgacgaggagcagcgcttcggcgtcgag
cacaaggagcagctcaagcagatgcgcacggccgtcgacgtgcttgcgatgtcggcgacg
ccgatcccgcgcacgctcgagatggctgtcaccggtatccgcgagatgtcgacgctcgcg
acgccgccggaggagcgtcaccccgtcctgacgttcgtcggggcgtacgacgagaagcag
ctgacggcggccatccgacgcgagctgatgcgtgaaggtcaggtgttctacgtccacaac
aaggtcggcagcatcgagaagcaggctgcgcgaatccgcgtactcgtgcccgaggcccgg
gtcgcgacggcgcacggcaagatggaggaggcgcgcctggaggaggtggtcgtcgacttc
tgggagcgcaagttcgacgtgctcgtctcgacgacgatcgtcgagacgggtctcgacatc
gcgaacgccaacagcctcatcgtcgagcgcgccgaccagctcggcctcagccagctgcac
cagctgcgcggacgcgtggggcgcggtcgcgagcgcgcgtacgcctacttcatgttcccg
gccgagaagccgctgaccgagacggcgcacgaccggttgcagacgatcgcgagcaacacc
gacctcggcgcgggcatgcagatcgcgatgaaggatctggagatccgcggcgccggcaac
ctgctcggcggcgagcagtccggccacatcgcgggggttggattcgacctgtacgtccgc
atggtcggtgaggccgtcgccgactaccgcggcgacgacacctcgtcgatgccggtcgag
atcaagatcgaactgcccgtcgacgcccacctgccgcacgagtacgtgccgggggagcgg
ctgcgcctcgaggcgtacaagaagctcgcgagcgtggagaacgaggcagccctcgacgag
atcatcgccgagctgaaggaccgctacggcgagccgcccgcacctgtgctcaacctgttc
gacgtggcccggctgcgcaccatcgcgcggcaagcgggcatcagcgacatcggggtgcag
ggcaagtacgtccgtttcggcccggtcaccgagctgcgcgagtcgcagcagatgcgcctc
gagcgcctcttcccgggcacgctcatcaagaccaaccaggagcggttgctcgtgcctatg
ccgatgacgaagcccgtcgccggcaagccgcttcgcgaccaggcgatcctgcagtgggcg
gcgcagctcgtccaggccgtgctgctcgacgacatcgccgccgccgcggcggcgcaggag
atggcgcgcgcgggcggagcgcgacgatga
DBGET
integrated database retrieval system