Dichelobacter nodosus: DNO_0689
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Entry
DNO_0689 CDS
T00517
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dno
Dichelobacter nodosus
Pathway
dno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DNO_0689 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dno03400
]
DNO_0689 (mfd)
Enzymes [BR:
dno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DNO_0689 (mfd)
DNA repair and recombination proteins [BR:
dno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DNO_0689 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SecA_DEAD
Glyco_tran_WecG
AAA_22
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ABQ13545
UniProt:
A5EV48
LinkDB
All DBs
Position
complement(738458..741811)
Genome browser
AA seq
1117 aa
AA seq
DB search
MVPFAYKTMTEKFKHLAYNLAHHLLPKHVHLIVAPDAVWAQYLYDNLMFWLKNSAWQQTL
YYFSDWETLPYDHYTPHPDLVSERIRVLAELPTLTQGIVITSTSAFRQRLCPQTHLDKFG
IHCAVGDHIAQKTVINRLLQAGYQSTHFISEKGEYATRGNIVDLFPMAAQTPIRLEWLDD
EIDSIRFFDLKTQLTLKKCQQLSILPARELDLSDAGRVCFRQSARQYFGEHIHQSGIYQS
LSEGRTPQGLEYYLPLFFDETAHLLDYFPSNTCYIPADELAVSLQNHDDYCHKRYQRLNH
LRENSLLAPEQLWFSPQELQERLATLPTHMPKNRCTALPFSDETPRGQQWLEQFATAERA
VLHFSSQGLREYWFDRLYQEYPQCLISDELPPKNYPALCISPLQYSFCADGITHLAETDR
HGSHTTPNYRQNKHKDAGAIIQSLQDLTLGAPVVHIDHGVGRYRGLEMIDDDEMLVIEYA
KGARLFVAISDLDLISKYSGTASENAPLHELGGKVWQNAKKKAQQTARDTAAELLAIYAA
REAASAQALTFDPHMLADFAQQFEYETTPDQQAAIDAVLNDLQQAKPMDRIVCGDVGFGK
TEVAMRAAYAAVLAGYQCAIITPTTLLADQHVHNFLDRFSHIAVRIAAISRFKTPAEQRA
IVQSLRDGTIDIVIGTHRLLQKDIAFARLGLVIVDEEHRFGVKHKEALKSLRADVNLLTL
TATPIPRTLNLALSGLRDLSIIATAPAGRQSIQTIISQYDPIVIEEACERELNRGGQIYF
LHNDVSSIDRIARALSEQLPQARIAVAHGQLRERALEKIMQDFYNRHYDLLVASTIIESG
IDIPNANTIIINRADKLGLAQLHQLRGRVGRSHHQAYAYLITPAWQTLNKDAQRRLSAFT
ELDSLGAGFLLASQDLEIRGAGEILGDEQSGQIQQIGMSYYLDLLERATAALKSGQDFNQ
EEIAVRYQIDIGEAALLPDTYVFDPQIRLTLYHRLARAKSIAEIDDVMIELSDRFGSLPV
LAQNLCHKARLHVYAQLIGIEKIRLQTKTIELQFLPTATIDANKLIEKLQRDPQCYKMTA
PTSVRILLEEASTFAEKRVHLQKLLTEIVTPAQEIIL
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggtgccttttgcttacaagaccatgaccgaaaaattcaagcatcttgcctacaatctt
gcgcaccatttattacccaaacacgttcacctcatcgtcgctcccgatgccgtttgggcg
caatatctttacgataacctcatgttttggttaaaaaacagcgcatggcaacaaacactt
tattacttttctgattgggaaaccctgccctacgatcactacacgccgcaccctgattta
gtttcggagcgcattcgcgtattagcggaactgcccacgttaacgcaaggcatcgtcatc
accagcaccagcgcctttcggcaacgtctttgcccacaaactcatttagataaattcggc
atacattgtgccgtcggtgatcacatcgcgcaaaaaaccgtcattaaccgcctactgcaa
gccggttaccaaagcactcatttcatttcagaaaaaggcgaatatgccacgcgcggcaat
atcgttgatctctttcccatggcagcccaaacgccaattcgtttggaatggttagatgat
gagattgattccattcgcttttttgatctcaaaacgcaactcactttaaaaaaatgtcag
caactatcgattttaccggcgcgagaactcgatctttccgatgctggacgcgtttgtttt
cggcaatctgcgcgccagtattttggcgaacacattcatcaaagcggcatctatcaaagc
ctttcggaaggacgcacaccgcaaggattagaatattatctaccgctttttttcgatgaa
accgcgcatttattggattattttccgtccaatacttgctacattcccgccgatgaactc
gccgtttctttgcaaaatcacgacgattattgtcacaaacgttatcaacggctcaatcat
ttgcgtgaaaacagtttattagcgccggaacaactttggttttcaccgcaggaacttcaa
gaacgattggcaaccttgcctactcacatgccgaaaaaccgctgcactgccctgcccttt
tctgatgaaacgccgcgcggacaacaatggttggaacaattcgctactgctgaacgtgcc
gtgctccatttttccagtcaaggattgcgggaatattggtttgatcgtttataccaagaa
tatccgcagtgtttgatcagcgatgaattgccgccgaaaaattatccggctttatgcatt
tcgccgctgcaatatagtttttgcgctgacggtatcacgcatttagcagaaaccgatcgc
cacggcagccacaccacgccgaattatcggcaaaataaacataaagatgccggcgccatc
attcaaagtttgcaagatttaacgctcggcgcacccgtggtacatatcgatcacggcgtt
ggacgttatcgcggtttggaaatgatcgatgatgacgaaatgctggtgattgaatacgct
aaaggagcgcgtttatttgttgccatcagcgatttagatctcatcagtaaatacagcggc
acggcgtccgaaaacgcaccgctgcacgaattaggcggcaaagtttggcaaaacgcgaaa
aaaaaggcgcaacaaaccgcccgcgatactgccgccgaattattagcaatttatgccgcc
cgcgaagctgcatcagcgcaggctttaacattcgatccgcacatgctcgcggattttgcc
caacaatttgaatatgaaacaacgcccgatcaacaagctgccatcgatgccgtgttaaac
gatttacagcaagcaaaacccatggatagaatcgtttgcggcgacgttggttttgggaaa
acggaagttgcgatgcgcgcggcttatgctgccgttttagccggttatcaatgcgcgatt
atcacgccaaccactttgcttgccgatcaacatgtgcataattttttagatcgtttttct
catatcgccgttcgcattgctgccatcagtcgttttaaaacgccggcagaacaacgcgct
atcgtgcaatcattgcgcgacggcacgattgatatcgtgattggaacgcatcgtttgctg
caaaaagatatcgcatttgcgcgattaggattagtgattgttgatgaagaacaccgtttt
ggcgtaaaacacaaagaagcgttaaaaagtttgcgcgccgatgtgaatttgttgacgtta
acggcaacgccgataccgcgcacgcttaatctggcgctttcgggtttacgcgatttatcg
atcatcgctaccgcccccgccggcagacaatccattcaaaccattatcagtcaatacgat
cccatcgtgattgaagaagcttgtgagcgtgaactcaaccgcggcggtcaaatttatttc
ctgcataatgacgtctccagcattgatcgcatcgcgcgcgctttatcagaacaattacca
caagcgcgcattgcagtagcgcacgggcaattacgcgaacgcgcgctcgaaaaaatcatg
caagatttttataaccgccattacgatttattagtcgcaagcacgattatcgaaagcggc
atcgatatccctaacgcgaatacaatcatcattaaccgcgccgataaattaggtttagcg
cagttgcatcaattacgcggacgcgtgggacgcagtcatcatcaagcttatgcttattta
attacgccggcgtggcaaacgctcaataaagacgcgcaaagacggctttcggcgtttacc
gaattagacagtttgggcgcaggatttttgctcgccagtcaagatttagaaattcggggc
gccggcgaaattttaggcgatgaacaaagcggacaaattcaacaaatcggtatgagttat
tatcttgatttgctcgaacgcgccaccgcggcgctcaaatctggacaggattttaatcaa
gaagaaattgccgttcgttatcaaattgatattggtgaagcggctttattgccggatacg
tacgtttttgatccgcaaattcgtttaacgctttatcatcgtttggcgcgcgcgaaaagc
atcgctgaaattgatgacgtgatgattgaattaagcgaccgctttggcagtttgccggtt
ttggcgcagaatttatgccataaagcgcgtttgcacgtttacgcacaattaatcggtatt
gaaaaaattcgtttgcaaactaaaaccattgaacttcaatttttgccgacggcaacgatt
gatgccaataaacttatcgaaaaattacaacgcgatccacaatgctacaaaatgaccgcg
ccaacttccgtgcgcattttattggaagaagcgtccacgtttgctgaaaaacgcgtacat
ttgcaaaaattattaaccgaaatcgtcacgccggcgcaggaaattattttataa
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