Dokdonia sp. MED134: MED134_08646
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Entry
MED134_08646 CDS
T03275
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MED134_08646 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_08646 (mfd)
Enzymes [BR:
dok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MED134_08646 (mfd)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MED134_08646 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MAGSP
UB2H
MADF_DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
EAQ39546
LinkDB
All DBs
Position
complement(1940988..1944386)
Genome browser
AA seq
1132 aa
AA seq
DB search
MSKSELSQHFAQSLPLQKLGEAIAHSQRIQAKGLTGSSLSFAVSQLFEGRERPVLLILND
KEEAAYYLNDLEALRKEENVLFYPGSYRRPYQIEETDNANILLRAEVLNRVNSRKKPALI
VTYPDALFEKVVTRKELDRQTLKVTVNDKLSLDFINEMLFEYRFKRVDFVTEPGEFSVRG
GIVDVFSFSHDRPYRIEFFGDEVDSIRTFDVESQLSLDQVKKISIMPNVENKALEETRAS
FLKYISTKTVVFIKNRSLLYDRTDQNFSKAEEAFENLSQEVKRNSPEELFCHGKNLKEQL
DSFTTIDLGSSAEVGEIEHSITFDVAPQPSFNKQFNLLIENLNDNHARGYKNIITCSSEQ
QAKRFQDIFDDADAIVSSYETIVLSLYQGFVDNDTKMVVYTDHQIFERYHKFNIKNGYAK
KQAITLKELTNLSVGDYVTHIDHGIGKFGGLKKIDVEGKMQEAIKLIYGERDILYLSIHS
LHKITKYNGKDGKPPQVYKLGSQAWKKLKAKTKSKVKHIAFNLIKLYAKRRLQKGYAFGP
DTHMQHELEASFIYEDTPDQSSVTEDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAAFKA
VDNGKQVAILVPTTILAYQHARTFKERLKGFPVTVEYLNRFRTAKEKREVLAGLESGAVD
IVIGTHQLTSKNVIFKDLGLLVIDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQF
SLMAARDLSTITTPPPNRYPIESNVVRFSEEVIRDAVSYEIQRGGQVFFIHNRIENIKEV
AGLIQRLVPDAKVGVGHGQMEGKALEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFI
NNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSVMTEDARKRIQALEQFSVLGSGFNI
AMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKEDEFAELYKDDPAFAKEE
REYVKDTVLDTDFSLLFPDDYVNSITERLNLYTDLNNVKTEEQLDDFEAKLVDRFGPLPD
EAEDLLDSVRIKWVATKIGLEKVVMKNGKLTGFFIADQQSSFYQSPTFGRVLKFVQENAY
RVSIKEKKLSKGLRLLLKSDDAKTVNDVVALLRPLMPASTQKVTAKTSGGDE
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaatcagaactctcacagcactttgcacagtctctgccactgcagaaactaggg
gaagctattgcccattctcaacgtatacaagcaaaaggtctcacgggatcgtcattatct
tttgctgtaagtcagctttttgaaggccgagagcgccccgtattgttaattcttaatgat
aaggaagaagcggcttactatctcaatgatctagaagccttgcgcaaggaagaaaacgta
ctcttttaccctggaagttacaggcgtccgtaccagattgaggagacagataatgcaaat
atcttgttgcgagcagaggtgcttaatcgtgtaaactcacgtaaaaagccagctcttatc
gtaacgtatccagatgcgttatttgaaaaagtagtgacacgtaaggagctagatagacaa
acgctcaaggtgactgtaaatgataagttatcgctagattttataaatgagatgctcttt
gagtatcgttttaaaagagtagattttgtaacagagccgggtgagttttcggtgcgtgga
ggtattgtagatgtattttcattttcgcacgacaggccgtaccgtatagaattttttggc
gatgaggtagatagtattagaacctttgatgttgagagtcagctgtcgttagaccaagta
aagaaaatatcaataatgcctaatgtggagaacaaggcattagaagaaacaagagctagt
ttcttaaaatatatctctacaaagacagtcgttttcattaaaaacaggtcgttgttatat
gaccgtacagatcaaaacttttctaaagccgaagaagcttttgaaaacctctcacaagag
gtaaaacgcaactcaccagaagagcttttttgtcacggcaaaaatctaaaagaacaactt
gactcttttaccactatagatttaggaagtagtgcagaggtaggtgagatagaacatagc
atcacctttgatgtggcgccacagccatcttttaataagcagtttaaccttcttatagaa
aacttaaatgataaccacgctcgcggttataagaatataatcacctgtagtagtgagcag
caagcaaagcgttttcaagacatttttgatgatgcagatgctattgtatcgtcctatgag
accattgtgctatcactttatcaaggttttgtagataatgacacaaaaatggtggtgtat
acagatcaccagatctttgaacgctaccataagtttaatatcaaaaatggttatgcaaaa
aagcaagccatcacgctcaaggagcttactaacctaagtgtgggtgattatgtcacgcac
atagatcacggtataggaaaatttggcggactcaaaaagatagacgttgagggtaaaatg
caagaagccatcaagctcatttatggtgagcgtgacatcttatacctgagtatacactca
ttacataaaatcaccaagtacaacggtaaggatggtaagccgccacaagtatataaacta
ggaagccaagcctggaaaaagcttaaagcaaaaacaaaatctaaggtaaaacacatagcc
tttaaccttataaaactctatgcaaaacgccgcttgcaaaagggatatgcctttgggcca
gacacccatatgcagcacgagctagaagcgagttttatatatgaagacactccagatcaa
agcagcgttacagaagatgtaaaacgtgatatggagagcgatcgccctatggatagacta
gtgtgtggtgatgtaggtttcggtaaaacagaagttgccatacgtgccgcgtttaaggcg
gtagataacggtaagcaggtagcaatactggttcctaccacaatacttgcctatcaacac
gcgcgtacgtttaaagaacgccttaaaggtttcccagtgacggtagagtatctcaaccgt
ttccgtacagccaaagaaaaaagagaagtgctcgccggcctcgagagtggcgcggtagat
attgtgataggtacacaccagctcactagtaaaaatgtcatttttaaagacctaggtctc
ctagtaattgatgaagagcaaaagtttggcgtagccgtaaaagataaactcaagactatc
tctgagaccgtagacacgctcacacttacagcaacacctataccgcgtaccttacaattc
tcacttatggcggctcgtgatcttagtaccatcaccacgccaccacctaaccgttaccct
atagaaagtaatgttgtgcgcttctcagaagaggtgatacgcgatgcagtctcgtatgag
atacaacgtggtggccaggtgttttttattcataatcgtatagagaatataaaggaagtc
gctggcctcatacagcgtcttgtgccagatgcaaaagtaggcgtaggtcacggccagatg
gaaggtaaagccctagaggcaaaaatgctctcgtttatgaacggggagtttgatgtactg
gtctcaaccaccataattgagagtggtcttgatgtccctaatgcaaataccatttttata
aataatgcaaataactttggactctcagacctacaccagatgcgtggtcgtgtgggacga
agtaataaaaaagccttctgttattttatcacaccgccatactctgtaatgaccgaggat
gctagaaaacgtatccaggcgctagagcagttttctgtactaggaagcggttttaatatc
gcgatgaaagatcttgagatacgtggtgcaggagatttattaggaggagaacagagcgga
tttatcaatgagataggttttgacacctatcaaaaaatcctcaacgaggccatagatgaa
ctcaaagaagatgagtttgcagagctttataaagatgatcccgctttcgcgaaagaagaa
agagaatacgtaaaagacaccgtacttgataccgactttagtcttctcttcccagatgat
tatgtaaatagcattacagagcgtcttaatctatacactgacctgaataatgtaaaaacc
gaagaacaactagatgactttgaagcaaaacttgtagatcgttttggacccttaccagat
gaggccgaagacttgctggactctgtgcgcattaagtgggtagcaactaagataggccta
gagaaagtagtaatgaaaaatggcaaactcacaggcttctttattgcagaccagcagagc
tctttttaccaaagtcctacctttggtcgtgtgcttaagtttgtacaagaaaacgcatac
cgcgtgagcatcaaagaaaagaaactgtctaaaggacttagacttctcttaaaatctgac
gatgcaaaaactgtaaatgacgtagttgcattattaagaccattaatgccagcgagtact
caaaaagtaaccgcaaagacctcaggaggtgatgagtaa
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