Dipodomys ordii (Ord's kangaroo rat): 105990575
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Entry
105990575 CDS
T07834
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105990575 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dord03400
]
105990575 (Lig4)
Enzymes [BR:
dord01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105990575 (Lig4)
DNA repair and recombination proteins [BR:
dord03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105990575 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
105990575
NCBI-ProteinID:
XP_012878466
Ensembl:
ENSDORG00000027303
UniProt:
A0A1S3FPG7
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MAASHTLQTVAAHVPFADLCSTLERIQKSKGREEKIRHFREFLDSWRKFHDALHKNKKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLNYRTPTGARS
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNELLDSVASSNSDKRKDLIKKSLLQLITQSSA
LEQKWLIRMIIKDLKLGISQQTIFSVFHNDAVELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKNQGFYIETKLDGERMQMHKDGDVYQYFSRNGFDYTQ
QFGASSREGSLTPFIHGAFRPDIQVCILDGEMMAYNPNTQTFMQKGVKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYEILSSTFIPIQGRIEIVQKRQAHTKNEVVDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYITGLMDELDILIVGGYWGKGARGGMM
SHFLCAVAEKPPPGEKPSVFHSLCRIGSGYTMKELYDLGLKLAKHWKPFSKKTPPSSILC
GTEKPEVYIEPCNSVIVQVKAAEIVPSEMYKTDCTLRFPRIEKIREDKEWHECMTLDDLE
QLRGKASGKLASKHLYVNENDEPREKKRKAAPKMKKVIGIIEHLKAPNLSNVSKVSNVFE
DVEFCVMSGTDQHPKPELESRIAELGGYIVQNPGPDTYCVIAGSENIRVKNIISSDKHDV
VKPVWLLECFKTKSCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFVDTDLNQLQEVFSG
IKNSSEQTPEEMTSVIADLEYRYSWDGSPIAMFRHHTVYMDLYGVINDLNTKIRGTKLAI
TALELQFYGAKVVSCLAEGVSLVIVGQDQSRVGKFKAFRRTFKKKFKILKESWVTDSLDQ
GELQEENLYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcatcacacactttacagacagttgcagctcatgttccctttgcggatttatgc
tcaactttagaacgaatacagaaaagtaaaggtcgtgaagaaaaaatcagacacttcagg
gaatttttggattcatggagaaaatttcatgatgccctccataagaacaaaaaagatgtt
acagactctttttacccagcaatgagacttattcttcctcagctagagagagaaagaatg
gcgtatggaatcaaagaaacaatgcttgctaagctttatattgaattgcttaatttacca
aaagatgggaaagatgccctcaaactcctgaattacagaacacccactggagctcggagc
gatgctggagactttgcaatgattgcgtactttgtactaaagccaagatgcttacagaaa
ggaagtttgactatacagcaggtaaatgaacttttggactctgttgccagtagtaattct
gacaaaaggaaagacttaataaaaaagagtctgcttcagctgataacccagagctcagca
cttgagcaaaagtggctcatccgaatgattatcaaggacttaaagcttggtattagtcag
caaactatattttcggttttccataatgatgctgttgagttgcacaatgtgaccacagat
ctggaaaaagtctgtaggcaactgcatgatccctcagtggggctcagtgatatttctatc
actttgttttctgcctttaaaccaatgctagctgccattgcggacattgaacgcattgag
aaggacatgaaaaaccagggcttctacattgagacaaagctggatggagagcgtatgcag
atgcacaaagatggagatgtgtaccagtacttctcccgaaatgggtttgactacactcag
cagtttggtgcttcttcgagggaaggttctcttacccctttcattcatggtgcattcaga
cccgacatacaagtctgtatccttgatggtgaaatgatggcctacaaccccaacacacag
acgtttatgcagaagggagttaagtttgatattaaaagaatggtagaagattctgacctg
caaacttgttactgtgtttttgatgtattgatggttaataataaaaagctaggacgtgag
accctaagaaagaggtatgagattcttagcagtacttttataccaatacaaggaagaata
gaaatagtacagaaaagacaggctcatactaagaatgaagtagttgatgcattgaatgaa
gcaatagataaaagagaagaggggatcatgatcaaacaccctctgtctatttataagcca
gacaaaagaggtgaaggatggttgaaaattaaaccggaatatatcacaggcctaatggat
gagttggacatcttaattgtgggaggctactggggaaaaggtgctcggggtggaatgatg
tctcactttttgtgcgctgtggcagagaagccccctcctggggagaaaccctccgtattt
cacagcctctgtcgtattggctcagggtacaccatgaaagaactgtatgatctgggtctg
aaattggccaaacattggaagcctttctcaaagaaaaccccaccaagtagcattttatgt
ggcacagagaagccagaagtatacattgaaccgtgtaattctgtcatcgttcaggttaag
gcagcagagattgtccccagtgaaatgtataaaactgattgcacactgcgttttccccga
attgagaagataagagaggacaaagagtggcacgaatgcatgacgctggatgacttagaa
caacttagagggaaagcatccggaaagctcgcgtcgaaacacctctatgtaaatgaaaat
gatgaacctcgagaaaaaaagcggaaagctgccccaaagatgaagaaggttattggcatt
atcgaacacttaaaagcacccaacctatctaatgtaagcaaagtttctaatgtatttgaa
gatgttgagttttgtgttatgagcggaacagaccaacatccaaagccagagctagagagc
agaattgcagaactgggcggttacatagtacagaatccaggaccagacacttactgcgta
attgcagggtctgagaacatcagggtgaagaacattatttcttcagataaacatgatgtt
gtcaagcctgtgtggctgttggagtgttttaagaccaaaagctgtgtcccctggcaacct
cgctttatgattcacatgtgtccctcaacaaaacagcattttgctcgtgaatacgattgc
tatggtgatagttattttgttgatacagatttgaatcaactgcaggaagtgttttcagga
ataaagaattctagtgaacagactccagaagaaatgacatctgtgatcgctgatttggaa
taccgttactcatgggatggctctcctattgccatgtttcggcaccacactgtttatatg
gacttgtatggggtcattaatgacttgaataccaaaatcaggggaacaaaattagccatt
acggccctagaacttcaattttatggggcaaaagttgtttcctgtttagctgaaggggtg
tctcttgtgattgttggacaggaccaaagtcgtgttggaaaatttaaagctttcagaaga
acttttaagaaaaagtttaaaatcttaaaagaaagttgggtaactgattcattagaccag
ggtgaattgcaagaggaaaatctgtatttgatttag
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