Dipodomys ordii (Ord's kangaroo rat): 105994690
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Entry
105994690 CDS
T07834
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03013
Nucleocytoplasmic transport
dord03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105994690 (Upf1)
03015 mRNA surveillance pathway
105994690 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105994690 (Upf1)
Enzymes [BR:
dord01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105994690 (Upf1)
5.6.2.5 RNA 5'-3' helicase
105994690 (Upf1)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105994690 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
105994690 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
105994690
NCBI-ProteinID:
XP_012883772
Ensembl:
ENSDORG00000009984
UniProt:
A0A1S3G6W9
LinkDB
All DBs
Position
Unknown
AA seq
1148 aa
AA seq
DB search
MVPESGSNSTLPEKRGDGGAAVCKSGEQTHTDSRRSVALGGRGDGGVTAIRIAASRVHVR
VGTVLLGRRGGWPEASLARPASRRGLLSPPPPRRAGAGIGGRLQLYEVGPEGVLQNGAVD
DSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGN
TSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCR
QPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWK
ENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNIT
VRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDE
IAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEV
EDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA
RQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDS
MPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQF
RSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVV
LGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV
TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS
GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV
IIVGNPKALSKQPLWNHLLSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFM
TTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQLGVISAGPSHVAAMNIPIPFNLVMP
PLPPPGYFGQANGPAAGRGTPKSKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFS
QGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHG
GVTGLSQY
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggtgccggagtcgggctccaactccacccttcctgagaaacgtggggacgggggcgct
gccgtgtgcaagagtggagagcagacccacacggacagccgccggagcgtggccctgggt
ggccggggagacggcggggtgacggccatcagaattgcagccagccgggtccacgtcagg
gtcggtaccgtgctgctgggccgcagaggagggtggcctgaggccagcctggcacggcca
gccagccgcaggggtctgcttagtccccccccccctcgccgcgcaggcgcaggcattggc
ggacgtctccagctttatgaagttggacccgagggcgtcctgcagaatggggctgtggat
gacagtgtggccaagaccagccagctgctggcggagctgaacttcgaggaggatgaggaa
gacacgtactacaccaaggacctccccatccacgcctgcagttactgcggaatccacgac
cccgcctgtgtggtgtactgcaacaccagcaagaagtggttctgcaacggccgcgggaac
acgtccggcagccacatcgtgaaccacctggtgagggccaagtgcaaggaggtgacgctg
cacaaggacgggccgctgggcgagacggtgctggagtgctacaactgcggctgccgcaac
gtcttcctgctcggcttcatcccggccaaggccgactcggtggtggtgctgctgtgccgg
cagccctgcgccagccagagcagcctgaaggacatcaactgggacagttctcagtggcag
cccctgatccaggaccgctgcttcctgtcctggctggtgaagatcccgtcggagcaggag
cagctgcgggcgcggcagatcaccgcgcagcagatcaacaagctggaggagctctggaag
gagaacccctcagccacgctggaggacctggagaagcccggagtggacgaggagccgcag
cacgtgttgctgcggtacgaggatgcctaccagtaccagaacatcttcggccccctggtc
aagctggaggccgactacgacaagaagctgaaggagtctcagactcaagataacatcaca
gtcaggtgggacctgggccttaacaagaagagaatcgcctacttcactttgcccaagact
gactctgacatgcggctcatgcagggagacgagatctgcctgcggtacaagggcgacctc
gcgcccctctggaaggggatcggccacgtcatcaaggtcccggataattacggtgatgag
atcgccattgagctccgcagcagcgtgggggcccccgtggaggtcacccacaacttccag
gtggacttcgtgtggaagtccacctcctttgacaggatgcagagcgccttgaaaaccttc
gctgtggacgagacctcggtgtcgggctacatctaccacaagctgctgggccacgaggtg
gaggacgtgatcatcaagtgccagctgcccaagcgcttcaccgcgcaggggctcccagac
ctcaaccactctcaggtgtatgccgtgaagaccgtgctgcagaggccactgagcctcatc
cagggcccgccaggcactggcaagacggtgacgtcggccaccatcgtctatcacctggct
cggcagggcaatgggccggtgctggtctgcgccccgagtaacatcgctgtggaccagctg
accgagaagatccaccagaccgggctgaaggtggtgcgcctgtgcgccaagagccgggag
gccatcgactcaccggtgtccttcctggccctgcacaatcagatcaggaacatggacagc
atgccggagctgcagaagttgcagcagctgaaggacgagaccggggagctgtcctcggcg
gacgagaagcggtaccgcgcactcaagcgcaccgctgagagagagctgctcatgaacgcg
gatgtcatctgctgcacctgcgtgggcgcgggcgaccccaggctggccaagatgcagttc
cgctccatcctcatcgacgagagcacacaggccactgagcctgagtgcatggtgcccgtg
gtcctcggggccaagcagctgatcctggtgggcgaccactgccagctgggcccggtggtg
atgtgcaagaaggcggcgaaggccgggctctcgcagtcgctcttcgagcgcctggtggtg
ctgggcatccggcccatccgcctgcaggtccagtaccgcatgcaccccgccctcagcgcc
ttcccctccaacatcttctacgagggctcgctgcagaacggcgtcaccgcagctgaccgt
gtgaagaagggctttgacttccagtggccgcagcctgacaagcccatgttcttctacgtg
acccagggccaggaggagattgccagctcgggcacatcctacctgaaccggacggaggcc
gcgaacgtggagaagatcaccacgaagctgttgaaggcgggcgccaagcccgaccagatc
ggcatcatcacgccgtacgagggtcagcgctcatacctggtgcagtacatgcagttcagc
ggctccctgcacaccaagctctaccaggaagtggagattgccagtgtggacgccttccag
ggccgcgagaaggacttcatcatcctgtcgtgtgtgcgtgccaacgagcaccagggcatc
ggcttcctcaatgacccgcggcgcctcaatgtggcactgacccgggccaggtacggcgtg
atcatcgtgggcaacccgaaggcgctgtcgaagcagccgctgtggaaccacctgctgagc
tactacaaggagcagaaggctctggtggaggggccgctcaacaacctgcgtgagagcctc
atgcagttcagcaagccccgcaagctggtcaacaccgtgaaccctggggcccgcttcatg
accaccgccatgtacgacgcccgcgaggccatcatccctggctctgtctacgacaggagc
agccagggccggccctcgaacatgtacttccagactcacgaccagctcggcgtgatcagc
gcgggccccagccacgtggcggccatgaacatccccatccccttcaacctggtcatgccg
cccctgccgccgccgggctacttcggccaggccaacgggcccgccgcgggccggggcacc
cccaaaagcaagactggccgtgggggccgccagaagaatcgctttgggcttcctgggccc
agccagaccaatctccccaacagccaggccagccaggatgtggcttcccagcccttctca
cagggcgccctgacgcagggctacatctccatgagccagccctcgcagatgagccagccc
ggcctctcccagcccgagctgtcccaggacagctacctcggggatgagttcaaatcccag
atcgacgtggccctgtcccaggactccacctaccagggcgagcgggcctaccagcacggc
ggcgtgacagggctgtcccagtactag
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integrated database retrieval system
