Dipodomys ordii (Ord's kangaroo rat): 105996338
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Entry
105996338 CDS
T07834
Symbol
Helz2
Name
(RefSeq) helicase with zinc finger domain 2
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105996338 (Helz2)
Enzymes [BR:
dord01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
105996338 (Helz2)
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105996338 (Helz2)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105996338 (Helz2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_30
AAA_19
PhoH
AAA_22
ResIII
UvrD-helicase
nSTAND3
UvrD_C_2
SLFN-g3_helicase
DEAD
zf-C2H2_jaz
UvrD_C
AAA_24
zf-met
OB_Dis3
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
105996338
NCBI-ProteinID:
XP_012885839
Ensembl:
ENSDORG00000005596
UniProt:
A0A1S3GC64
LinkDB
All DBs
Position
Unknown
AA seq
2914 aa
AA seq
DB search
MHLSPSCRETDDASLCSAWPTLEMASPGCNLYSANPPATQGPSLAGLYAQVDLCLGCSHC
TQRLNESTYVLRTVEHQCPAEVLLARCKGAAKSKIWRHVGRRPRFPRPLHYQVCRYYSPG
RGCRRHWNQCTFARSPEEALVWTFECRHSLPRLWLKAAVQGSRAQGGPADIIRAEFGGRF
QLLCAYCFRRCPPALCPVDSLGRCPEHGTCPSLLIHVNEEGRKRQFLEVRPRPRNRRPLD
YCMFVGRGWPCRHGAARCQYAHSAVEMAVWEAERLGGLLRGDLLRPSTPGEDKPTATHNQ
PATLQLYCRACLVTCRSQEAFENHCSSLEHAQMVSLDQALPWEHRAPPIGLSKFELCPRP
DLCEYGDICVKAHSAQELQEWIQRAQTTELREQAAWQDGLVPYRARLLAEYQHSSSEVLV
LSESIPGVSITCNQPLVHQAQEKKAQHRWTFAIHSADPLLHVALLKQEPGAEFSLVAPHL
LPGQLYALGERFRVPSSPAEFQVGVCVQASSFGSFEQWVAFDFGRRPVLLRKLGLQLGQT
PSRGLRARPEPGRPEEVERWHTGNRCIVRSVERTDEQVALMAKYKAPALALESSLQDLAL
SPITCTNYRQMMHHFLHKEEAAQQQLVAKLTLRGQVSLKTALQTPAVGMLFAPPGALYAE
VPIPSSLVPDSDQGFLLARAVSTALVAPVPAPNNTVFEVRLETRASSEQALWLLLPPRCC
VALGLRPETSPTLEVQFQIDPLTFRLWHQAVDALPEERLVVPDLPACVLPHPCPIPPALP
GNRKQKLAMGLIAGSCPESLKPTPPLLIYGPFGTGKTYTLAMAALEVIRQPHTKVLICTH
TNSAADIYIREYFHGFASAGHPEAAPLRVMYTDRPPNQTDPATLKYCCLTPDGRAFRLPT
GAELAQRRLVVTTSSQARELRVPVGFFSHILIDEAAQMLECEALIPLAYASPRTRVVLAG
DHMQVTPRLFSVARTKAAVHTLLYRLFLHYQQGAHDLARQSRIIFHENYRSSAAIISFVS
RHFYVAKGTPVHASGKVPCHPRHYPLMFCHVAGSPERDLSMTSWLNAAEVVQVVEKVQEA
YNTWPACWGSREQRHICAVSHGAQVGALRQELRRRNLGEVSVGNFEILPGREFRVVVLST
VHNRHSLLSPGAPTLEFFTDARVLNTVMTRAQSQLVAVGDAVALCSFGACSKLWKSFIRE
CIEHRSVCPEGLSLGQIEQGVAQRQQWTTERSWAGVVRDGVLAERAGGPSPEHRAAVAKV
LPGLASEAEAVAGRRVGPAPKEGTPVGAAAGESVAPRGPAAQETALEGQWSEDLESDFWP
LDWELNADDAILKELLDESRQVMVTVGEDGLLDTMARPASPQQAQQYTNLPQSTLQKLLR
TEPELYRRCTFLQETFERASAIPLDDGSPSPLQVRGRLNCGMAFTGDEVLVQVLGPVAGD
RSVPGRLQGRVVGVLKRRRRELAFVCRMDEWDPRIMIPINSSVTKIFVAELKDRRQVPIH
RLFQGRVQRVRHESLAANAWRARLFWVRIVLWRERFYYPLGIVLEVLPEASTWEHGLRAL
DLEHGLKAPSPDDTSVSKALQKYHSELRTAAGHREDCRSFLTFTVDPTGACNLDDALSVR
DLGTGCEVAVHIADVASLLPRDGALDVEARRQGSVFYAPDREPMLMLPASLCQDALSLLP
GRDRLAISLFLTMEKGSGQLQRLRFAPSIVRSDCQLSYEEAEMLIKGHRGAGLALPACLD
SVGACVVAACYFSQALRRHRLQAACPYERLDEDSELGFRAAHIMVQEYMIQFNSLVAKFL
VDHERTGAVTPLRWQPTPSSHQLDAVGEKHRELVPLSLHLRHHLRPRGSPAARLHLLTSL
WKNIQLAAHSQDYGQMVDLIATDDMHPSLACASLDFRKALGRSVFCRAGRGRQQPAGHYS
LQVEWYTWATSPIRRYLDLVLQRLVLLALDCGGSAYSTREIDRLCQDFSRQYACAQSYQR
RAYSLYLATQLQAQPRDKLGFVVDMEPGARCFKLLFPANPDTLPDFYPVSYRSLQLAEHP
YSLVGRPGLRLVWRLRMYSVQTPKPPPLKPGPLWDPHTQAIDTTLWRQLLLLAEEQQWPE
LAALVQDQGAAKTWPHETGRVSHSHCGNVTEVTRELGSGDTLQVQLGARLQRGFLAPTLQ
LWKVAPGFSLCLEHTERPGDCFSGHPCRASQDQYCSADEYAQVWGPICSLDSAINAVTAG
DSITLQDVHISWDRKGTPPGQLQGAFSLDPAFLRENGIDTNFGCSYLCIRLEGLPAPPCP
ASAPSSLSPRLSIDPDTYTWAAHGLAHSWNQEDSEDGREAPGQVHFFIHHMAMEKIPEEV
QRPSTQFTVEVLSKPLPDLRKEEAVRQLKNASPLVTSIALGKPIPQACLWPGRKPHVMAS
RFLERLAYDIPGGGHKLNLSQNTAVRRALQRPFTVIQGPPGTGKTVVGLHIIFWFHKSNQ
EQTPPRGGPEGEGPQGAPRIIYCGPSNKSVDVLAGLLLSKRKELRPLRVYGEQYEAVDFP
MPGVGGRGLLSKTSQEGRPNPKLRSITLHHRIRQPSNPWAQEVRAFDARLQQGEVFSKED
LALYRKTLTKARKFELDQHSVLLCTCCCAATASLQGLHVGQILIDEAGMATEPETLIPLV
RFSKAEKVVLLGDHKQLRPVVKGEQLRNLGMDRSLFERYHRDAFMLDTQYRMHKDICTFP
SKEFYGQRLKTCPSLRRPPSLLGHAGRESCAVIFGHLQGREQVLMVSTDEGSENSRANPD
EVAEVVRITKQLTLDRTVDPKDIAILTPYNAQAAMIGQALKKEGVSGVTVSSITKSQGSE
WRYVLVSTVRTCPRSDVDGRPTKSWLRKFLGFVVDPNQVNVALTRAQEGLCLIGDHILLR
CCPLWCRLLEFYKAQNSLVPAKQVRVRRRSAVCS
NT seq
8745 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgtcacctagctgccgggagacggatgacgcatctctgtgcagcgcctggccg
acattggagatggcatccccagggtgcaacctgtattctgccaaccctccggccacccag
gggccatccttggctgggctttatgctcaggtggacctctgcctgggctgctcccactgc
acccagcgcctcaacgagagcacctatgtcctgcgcacggtggagcaccagtgtcccgct
gaggtgctgctggcccgctgcaagggagcggccaagagtaagatctggcgccacgtgggc
cgccggccccgcttcccccggcccctgcattaccaggtctgccgctactacagccctggg
cggggctgccggcgccactggaaccagtgcacctttgcccgcagccccgaggaagcactg
gtctggacctttgagtgccggcacagcctcccccgcctgtggctgaaggccgccgtgcag
ggctcccgggcccagggtgggcctgccgacatcatccgggcggagtttggcggtcgcttc
cagctgctctgtgcctactgcttcaggcgctgcccgcccgccctgtgccccgtggactcc
ctggggcggtgtcccgagcacggaacctgccccagcctcctcatccatgtgaatgaggag
ggccgcaagcggcagttcctggaagtgcggccacggcctcggaaccgccggcccctcgac
tactgcatgtttgtgggccgagggtggccctgccgccacggagcagctcgctgccagtat
gcgcacagcgcggtggagatggcggtgtgggaagctgaacggctcggcgggctcctgcgg
ggcgacctgctcaggccctccacccccggggaggacaagcccacggccacccacaaccaa
cctgccacgctccagctctactgccgtgcctgcctggtcacctgccgctcgcaggaggct
tttgagaaccattgctcctccttggagcacgcgcagatggtctccttagaccaggccctg
ccctgggagcaccgcgccccacccattgggctctccaagtttgagctgtgtccgaggcct
gacctctgtgagtatggtgacatctgtgtcaaagcacactcagcacaggagctgcaggag
tggatccagcgggcacagaccacggagcttcgagaacaggcggcctggcaggacgggcta
gttccctaccgggcccggctactcgccgagtaccagcacagcagcagtgaggtcctggtg
ctgtcggagagcatccctggagtgtccatcacctgtaaccagcccctggtacatcaggcc
caggagaagaaggcccagcacagatggacatttgccatccactctgcggaccctctgttg
catgtggctttactcaagcaggagcctggggcagagttttccctggttgccccccatctc
cttccaggccagctctatgcactgggcgaacgttttcgtgtgcccagctccccggcagaa
ttccaggtgggggtgtgcgtgcaggcctcctccttcggctccttcgagcagtgggtagcc
ttcgactttggccgccggcccgtgctgcttcggaagctggggctgcagctgggccagacc
cccagtcgagggctccgtgcaaggccagagcctggccgtcctgaggaggtagaacgctgg
cacacaggcaaccgttgcatcgtgcggagtgtggagcggacggacgagcaagtagccctg
atggccaagtacaaggcacctgccctggccctggagtccagcctccaggatctggccttg
agtcccatcacatgcaccaattaccggcagatgatgcaccacttccttcacaaggaggag
gccgcccagcagcagctggtggccaagttgacgttgagaggccaagtgtccctcaagact
gcgctgcagacgccggccgtgggcatgctcttcgctccgcctggggctctttacgctgaa
gtccccatcccctcctcactggtgccagactcagaccagggcttcctgctggcccgggcg
gtcagcacagctcttgtggctcctgtgcctgcacccaacaacacggtttttgaggtgcgg
ctagaaacccgggccagctcggagcaggcgctgtggctgcttctgcccccccgctgctgc
gtggccctgggcctgcggccggagaccagccccaccctggaggtgcagttccagatcgac
cctctgaccttccggctctggcaccaggcagtggatgccctgcccgaggagcggctggtg
gtgcctgacctgccggcttgtgtcctgccgcacccctgccctattccgcctgcattgccc
ggcaaccgcaagcagaagctagccatggggctcattgcaggcagctgccccgagagcctg
aagcccaccccaccactgctcatctacggcccctttggcactggcaagacctacactctg
gccatggcggccctggaggtcatccggcagccccacaccaaggtgctcatctgcactcac
accaacagtgcggccgacatctacattcgggagtacttccacggctttgccagtgccggc
cacccggaggcggctccactgcgcgtgatgtacacagaccgcccaccaaaccagaccgac
cctgccacgctgaagtactgctgtctgaccccggacggccgggccttccgcctgcccacg
ggggcggagctggcccagcgccgcctggtggtcaccaccagctcccaggcccgggagctc
cgggtgcccgtgggcttcttctcccacatcctcatcgacgaggccgcgcagatgctggag
tgtgaggccctcatcccgttggcctacgcctcgccccgtacccgtgtggtgctggcaggg
gaccacatgcaggtcacaccccggcttttcagtgtggccaggaccaaggcagccgtgcac
accctcctgtaccgcctcttcctgcactaccagcagggggcgcacgacctcgcccggcaa
agccgcatcatcttccatgaaaactaccgctcctcggcagccatcatcagctttgtctcg
cgccacttctacgtggccaagggcacccctgtccacgccagtggcaaggtcccgtgccac
ccccggcactacccgctcatgttctgccacgtcgcgggcagccccgaacgggacctgtcc
atgacctcgtggctcaacgcagccgaggtcgtccaggtggtggagaaggtgcaagaggcc
tacaatacgtggccggcctgctggggcagccgcgagcagaggcacatctgtgccgtctct
cacggggcccaggtcggcgcattgaggcaggagctcaggagaaggaacctgggagaggtg
tctgtgggcaactttgagatcctgccagggcgggagttccgggtagtggtgctgagcacc
gtccacaaccgccacagcctgctcagccctggggcgccgaccttggagttcttcacggac
gcccgtgtgctgaacacagtcatgacccgtgcccagtcccagctggtggctgtgggcgat
gccgtggccctctgttcttttggggcctgtagcaagctctggaagagctttatccgagag
tgcatagaacaccgtagtgtctgccctgaaggcctttctctggggcagattgagcagggc
gtggcccagaggcaacagtggaccacagagaggtcttgggctggagtggtcagggacggt
gtcctggcggagagagcggggggcccttccccggagcacagggcggctgtggcaaaggtc
ctgccggggcttgcgtctgaggcagaggccgtggcagggagacgggtgggtccggcaccg
aaggaggggacacctgtgggggctgccgcgggtgagagcgtggccccgcgaggcccagca
gcccaagaaactgccctggaaggacagtggtctgaggacctggagtctgacttctggccc
ttggactgggagctcaacgcggacgatgccatcctgaaggagcttctggatgagagccgg
caggtgatggtcacggtgggggaggatgggcttctggacaccatggccaggcccgcgtcc
ccgcagcaggcccagcagtacaccaacctgcctcagtccactctgcagaagctgctgcgc
acagagcccgagctgtaccgccgctgcaccttcctgcaggagacctttgagcgggcgtcc
gccatccccctggacgacggcagtcccagcccactccaggtcaggggccgcctgaactgc
ggcatggccttcacgggggacgaggtgctggtgcaggtgctgggccccgtggcgggcgac
aggagcgtcccagggcggctgcagggccgtgtggtaggggtgctgaagaggaggaggcgc
gagctggccttcgtgtgtcggatggacgagtgggacccccgcatcatgatccccatcaac
agttccgtcacgaagatcttcgtggctgagctgaaggaccggaggcaggtccccatccac
cgcctcttccagggtcgggtgcagcgggtgaggcatgagagcctggcggccaacgcctgg
cgcgcccggctcttctgggtgcgcatcgtcctgtggcgggagcgtttctactacccgctg
ggcatcgtgctcgaggtgctgcccgaggccagcacctgggaacacggcctccgagccctt
gacctggagcacggtctgaaggccccctcgccagatgacacctcggtgtccaaggctctg
cagaaataccactctgagctcagaacggccgcgggccacagggaggactgccgctccttc
cttaccttcaccgtggaccccacgggcgcctgcaacctggacgacgccctcagtgtccgg
gacctgggcactgggtgcgaggtggctgtgcacatcgccgacgtggccagcttgctgccc
agggacggagcgctggatgtggaagcgcgccggcagggctccgtgttctacgcccctgac
cgcgagcccatgctcatgctgccggccagcctctgccaggatgcactaagcctcctgccg
ggccgggaccgtctcgccatctccctcttcctcaccatggagaagggcagtggccagctc
cagcgcctgcgcttcgcaccctccatcgtccgctctgactgccagctgtcctacgaggag
gccgagatgctgatcaaggggcaccgaggggctggcctagcgctgccagcctgcctggac
tccgtgggggcctgtgtggtggcagcctgctacttctcccaggcactgcgccggcaccgg
ctgcaggctgcctgtccctatgagcggctggatgaggacagtgagctgggcttccgcgcg
gcccacattatggtccaagagtatatgatccagtttaacagcctggtggccaaattcctg
gtggatcacgagcgcacgggcgccgtcacgccgctgcggtggcagcccacacccagcagc
caccagctggacgccgtgggtgagaagcacagagagttggtgcccctgtccctgcacctc
cgccaccacctgcgcccccgtggcagccccgccgcacggctgcacctcttgacctctctc
tggaaaaacatccagctagccgcacacagccaggactacggccagatggtcgacctcatt
gccacagacgacatgcacccttcgctggcttgcgccagcctggacttccggaaggccctg
ggacgctccgtgttctgccgtgccggccggggccggcagcagccggccggccactactcg
ctgcaggtggaatggtacacctgggccacttcgcccatccgcaggtacctggatttggta
ctgcagcggctggttctgctggcgctggactgtgggggctctgcgtactccaccagggag
atcgacaggctgtgccaggacttcagccgccagtatgcttgcgcccagagctaccagcgc
cgggcctacagcctgtacctggctacccagctccaggcccagcctcgagacaagctgggc
tttgtggtggatatggaaccgggggcccgctgcttcaagctgctcttccctgccaacccg
gacaccctgcctgacttctaccccgtcagctaccgctccctgcagctggccgagcatccc
tacagtctggtgggcaggcccggcctgcggctggtgtggcggctccgtatgtactcagtg
cagacacccaaaccgccccctttaaagcctgggcccttgtgggacccacatacccaggcc
atcgataccacgctgtggcggcagctgctgctgctggcggaggagcagcagtggcccgag
ctggccgccctggtccaggaccagggtgccgcaaagacctggccgcacgagacggggcgg
gtgagccacagccactgtggcaacgtcactgaggtgactcgcgagctgggcagtggggac
actctgcaggtgcagttgggtgccaggctgcagcggggcttcctggcgccgaccctgcag
ctgtggaaagtagcacctggcttcagcctctgcctggagcacacggagaggcctggggac
tgcttctctggccacccgtgccgggcctctcaggaccagtactgcagtgcagatgagtat
gcccaggtatgggggccgatctgctccctggactctgccatcaacgcggtcacagccggt
gactccatcaccctgcaggacgtgcacatttcctgggatagaaaggggaccccaccgggg
cagctgcaaggtgccttcagccttgaccctgccttcctccgggagaacggcatcgacact
aactttggctgcagctacctctgcatccggctggaggggctcccggcccctccctgccca
gcctctgcgcccagcagcctcagcccccgcctgagcattgaccctgacacctacacctgg
gcggctcacgggctggcccacagctggaaccaggaggactctgaggacggacgggaggcc
cccgggcaagtgcacttcttcatccaccacatggccatggagaagattccagaggaggtg
cagagacccagcacccagttcactgttgaggtgttatccaaaccacttccggacctccgc
aaggaagaagctgtgcgtcagctaaagaatgcgtccccgctggtcaccagcattgccctg
ggcaagcccatccctcaggcctgcctctggcctggtcggaagccccatgtgatggccagc
aggttcctggagcggctggcctatgacatccccgggggaggccacaagctgaacctcagc
cagaacacagccgtcaggagggctctgcagaggccgttcaccgtcatccagggccctccg
ggaacagggaagacagtggtgggcctccacatcatattctggttccacaaatcaaaccaa
gagcagacaccgccccgcggcggccccgagggggaggggccacagggggcgccgcgcatc
atatactgcggtccttccaacaagtcggtggacgtcctcgcaggactgctcctgagtaag
aggaaagagctgaggccgctgcgtgtgtacggcgagcagtacgaggctgtcgacttcccg
atgccaggtgtgggtggcagaggcctgctcagcaagacctctcaggaggggaggcccaac
ccaaagctcaggagcatcacgctgcaccaccggatccgacagccctccaacccgtgggca
caggaggtcagggcatttgatgcccggctgcagcaaggggaagtcttctctaaggaggac
ctagccttgtaccggaagaccctgaccaaggcccggaagtttgagctggaccagcactcg
gtcctcctgtgcacgtgttgctgcgcggcgacagccagcctacagggcctgcatgtgggg
cagatcctcatcgacgaggccggcatggccaccgagccagagacgctcatccctctggta
cgcttctcgaaggctgagaaggtggttttacttggggaccataagcagctccggcccgtg
gtcaagggcgagcagctgcggaacctggggatggaccggtccctcttcgagcggtatcac
agggacgcctttatgctggacacgcagtaccgcatgcacaaggacatctgcaccttcccc
tccaaagagttctacgggcagaggctgaagacctgtcccagcctgcggcggccacccagc
ctccttggccacgcaggcagggagagctgcgccgtcatctttggccacctgcagggccgt
gagcaggtgctgatggtgtccacggatgaaggcagtgagaactccagggccaacccagac
gaggtggcggaggtggtccgcatcaccaagcagctaaccttggaccggacagtggacccc
aaggacatcgccatccttactccctacaacgcacaggctgcgatgatcggccaggccctc
aagaaagagggggtcagcggggtgaccgtgtcttccatcaccaagagccaggggagcgag
tggcgctacgtgttggtgagcaccgtccgcacctgtcccaggagtgacgtggatgggcgg
ccgaccaagagctggctcaggaagtttctgggctttgtcgtggaccccaatcaagtgaat
gtagccctcactcgggctcaagaggggctgtgcctgattggagaccacatcttgctgcgc
tgctgcccgctctggtgccggctcctggaattctacaaggcccagaatagcctggtgcct
gccaagcaggttcgggtccggagaaggtcagctgtgtgttcttga
DBGET
integrated database retrieval system
