Dipodomys ordii (Ord's kangaroo rat): 105997329
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Entry
105997329 CDS
T07834
Symbol
Trim56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dord04121
]
105997329 (Trim56)
Enzymes [BR:
dord01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105997329 (Trim56)
Ubiquitin system [BR:
dord04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105997329 (Trim56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
105997329
NCBI-ProteinID:
XP_012887177
UniProt:
A0A1S3GEA2
LinkDB
All DBs
Position
Unknown
AA seq
751 aa
AA seq
DB search
MVSQGSSPSLLEALNSDFLACKICLEQLRMPKTLPCLHTYCQDCLAPLAEGGHVRCPECR
ETVPVPGAGVAAFKTNFFVNGLLDLVKARTCGDLRADRPSCALCPLVGGASAGGPATARC
LDCADDLCQACADGHRRTRQTHAHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFL
CQPCGQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEQLLAGVDANLAGLEATREAEKAA
LARVKEQAARVGSQVDEAAEAILRALLAQKHEVLGQLRAHVEAVEEAARERLAKLEGQEQ
VARAAATFARRVLSLGREAEILSLEGAIAQRLQQLQDGPWSPGPASCPLPRLTLHPGVRD
KNCHLLSLSFEKQEGQDGDEEQAGAQGEDGTQSQGEEDGASQERQDGGQTPPEDRAQTPQ
EDERAHTPRGDRAQTPQEGGRARIERGSGQPTKKKRSRGRHKLASREPSPALGPQLEGSG
LLPRPVFVRSFPTRMPGDPCAPRITGLCAFGPQEILVADEQNGRLKRFSLKGDYRGQVPV
PEGQFPCSVAALRDAVAFSTNARLYLISHDGKVRWRRAVSHTQSSHAVAALPSRDRVAVT
VGSHVEVYNEEGSLATRFIPGGKAQRGQRALVFLATSPQGHFVVSDWQQKSVVVCDGLGR
VAGECQGPGLQGCQPGSVAVDKDGFIFLTLRGVNQVVILDPKGSYLSEFMSAYHGLEKPR
VISVVDGRYLVVSLSNGTIRVFLFRIQSADS
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggtttcccagggctcctcgccctccttgctggaggccctgaacagcgacttcctggcc
tgtaagatctgcctggagcagctgcgcatgcccaagacgctgccctgcctgcacacctac
tgccaggactgcctggccccgctggccgagggcggccacgtgcgctgcccggagtgccgc
gagaccgtccccgtgccgggcgctggcgtggccgcctttaagaccaacttcttcgtcaat
ggactcctggacctggtgaaggcgcggacgtgcggggacctgcgggccgaccggccgtcc
tgtgccctctgcccgctggtagggggcgcgagcgcggggggcccagccaccgcccgctgc
ctggactgcgccgatgacctgtgccaggcctgcgccgacggccaccgccgcacccgccag
acgcacgcgcaccgcgtggtggacctggtgggctaccgggccggctggtacgacgaggag
gcccgggagcgccaggccgcccagtgtccccagcaccccggcgaggcgctgcgcttcctg
tgccagccctgcggccagctgctgtgccgcgagtgccgcctggacccgcacctggaccac
ccgtgcctgcccctggccgaggccgtgcgcgcccgcaggcccggcctcgagcagctgctg
gcgggcgtggatgccaacctcgccggcctagaggccaccagggaggcagagaaggccgcc
ctggcccgggtgaaggagcaggcggccagggtgggcagccaggtggacgaagccgccgaa
gccatcctccgggctctgctggcccagaagcacgaggtgctggggcagctccgggctcac
gtggaggctgtggaggaggctgctcgagagaggctggccaaactggaaggccaagaacag
gtggccagggcggcggccacatttgcccggcgggtgctcagcctggggcgagaggcggag
atcctatctctggaaggggcgattgcccagaggctccaacaactccaagatggcccctgg
tccccggggccagcctcctgcccgctgccccggctgacactgcaccccggggtccgggat
aagaactgtcacctgctcagcctttctttcgagaagcaagagggccaggatggcgacgaa
gagcaagctggtgctcagggagaggacggaactcagagccagggagaagaggatggagcc
agccaggagagacaagatggaggccagacacccccagaagacagagcccagacaccccaa
gaagatgagcgagcccacactcccagaggggacagagcccagacaccccaagaaggtgga
cgagcccgaatagaaagaggcagcggccagcccaccaagaagaaaagaagccgaggccga
cacaagttagcctcccgggagcccagccccgcgctgggcccccagctggaaggttctggc
ctcctcccccggcctgtcttcgtccgcagcttccccacgcgaatgccgggggacccgtgc
gccccccgcatcacggggctctgtgccttcggtcctcaggagatcctggtggccgatgag
cagaacggacgtctaaagcgcttctccctcaagggcgactaccgaggccaggtgcccgtg
cccgagggccagttcccctgcagcgtggccgccctgcgggacgccgtggccttctccacc
aacgcccggctgtacctcatcagccacgatggcaaagtgcggtggcgccgggctgtgagc
cacacgcagtccagccacgcagtggccgcgctgcccagcagggaccgggtggctgtcact
gtgggcagccacgtggaggtctacaatgaagaaggcagcctagccacgcggtttatccct
ggcggcaaggcccagcgtggccagcgggccctggtattcctagccaccagcccacagggc
cattttgtggtgtccgactggcagcagaagagcgtggttgtatgcgacgggctgggccgc
gtggctggggagtgccaggggcctggcctgcagggctgccagccgggctccgtggccgtg
gacaaggacggcttcatcttcctgactcttcgcggagttaaccaagtggtaatcctggac
ccaaaggggtcctatcttagcgagttcatgtcggcctaccacggcctagaaaagcccagg
gtcatcagtgtggtagatggcaggtatctggtggtgtcactcagtaatggaaccatccgg
gtttttctttttcgtatccagtcagctgatagttaa
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integrated database retrieval system
