| Entry |
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| Symbol |
Os02g0214900, CLASS-1_TYPE_HISTON_DEACETYLASE_3, HDAC3
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| Name |
(RAP-DB) Class-I type histone deacetylase, Reproductive development, Seed morphology
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| KO |
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| Organism |
dosa Oryza sativa japonica (Japanese rice) (RAPDB)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:dosa00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Os02t0214900-01 (Os02g0214900)
03083 Polycomb repressive complex
Os02t0214900-01 (Os02g0214900)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:dosa03036]
Os02t0214900-01 (Os02g0214900)
Enzymes [BR:dosa01000]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
Os02t0214900-01 (Os02g0214900)
Chromosome and associated proteins [BR:dosa03036]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
Os02t0214900-01 (Os02g0214900)
HDAC complexes
Sin3A-HDAC complex
Os02t0214900-01 (Os02g0214900)
BRAF-HDAC complex
Os02t0214900-01 (Os02g0214900)
REST complex
Os02t0214900-01 (Os02g0214900)
SHIP complex
Os02t0214900-01 (Os02g0214900)
MiDAC complex
Os02t0214900-01 (Os02g0214900)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
Os02t0214900-01 (Os02g0214900)
Heterochromatin formation proteins
Other heterochromatin formation proteins
Os02t0214900-01 (Os02g0214900)
Chromatin remodeling factors
NuRD complex
Os02t0214900-01 (Os02g0214900)
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| SSDB |
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| Motif |
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| LinkDB |
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| Position |
chr02:complement(join(6429937..6430491,6428410..6428850,6427340..6427570,6427139..6427230,6426996..6427056,6425202..6425279,6424945..6425019))
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| AA seq |
510 aa
MDPSSAGAGGNSLASASCGDAQKRRVCYFYDPEVGNYYYGQGHPMKPHRVRMTHALLAHY
GLLAPAKMEVLRPLPARGIDLCRFHSDDYVAFLRAVTPETQLGQVRALRRFNIGPDCPVF
DGLYAYCQTYAGASVGAAVKLNHGTHDIAINWSGGLHHAKKSEASGFCYVNDIVLAILEL
LKLHERVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGDYFPGTGDIRDIGYSEGKYYC
LNVPLDDGIDDDSYQSIFKPIISKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAE
CVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGEELQEKLPYNEYYEYFGPEYSL
YVAASNMENRNTNKQLEEIKCNILDNLSKLQHAPSVQFQERIPETKLPEPDEDQEDPDER
HDPDSDMVLDDHKPTGHSARSLIHNIGVKREITETETKDQHGKRLTTEHKGPEPMAEDLG
SSKQAPTADANAVAVNAPGNARNEPGSSPK |
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| NT seq |
1533 nt +upstreamnt +downstreamnt
atggacccctcgtcggcgggcgcgggcggcaactcgctggcgtcggcgtcgtgcggcgac
gcgcagaagcggcgggtgtgctacttctacgacccggaggtgggcaactactactacggt
cagggccacccgatgaagccccaccgggtgaggatgacccacgcgctgctcgcccactac
ggcctcctcgccccggccaagatggaggtgctccgcccgctccccgcccgcggcatcgac
ctctgccgcttccactccgacgactacgtcgccttcctccgcgccgtcaccccggagacc
cagctcggccaggtccgcgccctccgccgcttcaacatcggcccggactgccccgtcttc
gacggcctctacgcctactgccagacctacgcgggggcctccgtcggcgccgccgtcaag
ctcaaccacggcacccacgacatcgccatcaactggtccggcgggttgcaccacgccaag
aagtccgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctc
ctcaagctccatgagcgagttctgtatattgatattgatatccatcatggagatggagtt
gaggaggcattctacacaacaaacagggttatgacagtctcatttcacaagtttggggat
tatttcccgggaacaggggatatccgcgacattgggtattcagaagggaagtattactgc
ctgaatgtcccgctggatgatggaattgatgatgacagctaccagtccatcttcaagccg
atcatcagcaaagtcatggagatgtatcgtcctggtgcagtcgtgcttcagtgcggcgct
gattcgttgtccggtgataggttgggctgtttcaatctctcagggaaaggtcatgctgaa
tgtgttaagttcatgaggtctttcaatgttccgttgcttcttcttggtggtggtggatat
accataagaaatgttgcacgctgctggtgttacgagacaggagttgcacttggtgaagag
ctacaggagaagttgccttacaatgagtattatgaatattttggtccagaatacagtctt
tacgttgcagcaagtaacatggagaacagaaatacaaacaagcaactggaggaaataaaa
tgcaatattctggacaatctttcaaaacttcaacatgcacctagcgtccaatttcaagag
cgaattcctgaaacaaagctacctgagccagatgaagatcaagaggatccagatgaaagg
cacgaccctgactctgatatggtgttggatgatcacaaacctacgggacactcagcaaga
agccttattcacaacatcggagtaaagagagaaattactgaaacagagaccaaagatcag
catggtaagagattaacaaccgaacataaaggaccagaaccgatggcagaggatcttggt
tcctccaagcaagctcctactgcggatgcaaatgcggtggccgtcaacgcgccaggcaac
gccaggaatgaaccgggaagctcacccaaatga |
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