Oryza sativa japonica (Japanese rice) (RAPDB): Os04t0508900-00
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Entry
Os04t0508900-00 CDS
T02163
Symbol
Os04g0508900
Name
(RAP-DB) Similar to OSIGBa0101P20.13 protein.
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03022
Basal transcription factors
dosa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Os04t0508900-00 (Os04g0508900)
09124 Replication and repair
03420 Nucleotide excision repair
Os04t0508900-00 (Os04g0508900)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os04t0508900-00 (Os04g0508900)
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os04t0508900-00 (Os04g0508900)
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Os04t0508900-00 (Os04g0508900)
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Os04t0508900-00 (Os04g0508900)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Castor1_N
Motif
Other DBs
RAP-DB:
Os04t0508900-00
LinkDB
All DBs
Position
chr04:complement(join(25438541..25439059,25436656..25437117,25436197..25436575,25435640..25435767))
AA seq
495 aa
AA seq
DB search
MGFQFFFQVQASKASTVKHGKARKVKENPLKSPGTPKPGPSPRSPTSPLLPPLLPLRLAA
ASTMYGVGGGGGGFNAPYTASARRRNHEDDDDEEEEESGEGRVLEAWERAYADDRSWEAL
QEDESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIRYLYIVIDLSRAASEMDY
RPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQIKALMGKLE
CSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIAKCKKSKIRCSV
IGLAAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQR
GAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFP
VQPFDEVSSVHPNRLGQKGGQKCYGCQQSFINPDSQSSLHVRCPKCNQHFCLDCDIYIHE
SLHNCPGCESQRSSS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgggttttcagtttttttttcaagtgcaagcaagtaaggcctcaaccgtcaagcatggg
aaagctagaaaagttaaggaaaacccactcaaaagcccaggaaccccaaaacctggccca
tctccccggtccccgacctcgcctctccttcctcctctgctcccactccgcctcgccgcc
gcctccaccatgtacggcgtcggcggcggcggcggggggttcaacgcgccctacacggca
tcggcccggcggcgcaaccacgaggacgacgacgacgaggaggaggaggagtccggcgag
gggcgcgtcctcgaggcctgggagcgcgcgtacgcggacgaccggtcatgggaggcgctg
caggaggacgagtcgggcctcctccgcccgatcgacaccaagaccctcgtccacgcgcag
taccgccgccgccttctcctccgctctgccgcctccgccgccgcccgcatccagaagggc
ctcatccgctacctctacatcgtcatcgatctctcccgggcagcttcagagatggattat
cgacctagtcgaatggctgttgttgcaaaatatgctgaggtattcataagggaatttttt
gaccagaatcccttgagtcatgtggggatagtgacaatgaaagatgggatttcccatcga
cttacagagattggaggtagtcctgaatcacagattaaagcattgatggggaagcttgag
tgttctggtgaaccatctctgcagaatgctctagagcttgtccatggttatttagaccag
gttccttcatatggtcacaaggaagtattatttttgtactcggccctgaatacctgtgat
cctggagatatcatggagacaatagcaaaatgcaagaaatccaaaatacgatgttcggtt
attgggcttgctgcagagatttttatctgcaaatatctgtgtgaagagactggcggatcc
tacacagttgcactggatgagtcccatttcaaggaattgcttctggaacatgctcctcca
ccacctgcaattgctgagtatgctgcagctaatttgattaagatgggttttccgcagaga
ggagcagaggatcttatctccatctgctcttgtcacaagaaaataaagtcgggggctgaa
ggttacatatgtcctagatgcaaagtcaatgtatgtgagcttccaacagaatgtcgaact
tgcgggctgacactagttagctctccacatctggcaaggtcctatcatcatctcttccct
gtacaaccatttgatgaggtgtcctccgtgcacccaaatagactaggtcaaaagggagga
caaaagtgttacggctgccagcaaagctttattaaccctgatagtcaatctagcctccat
gttcgctgtccaaaatgcaaccaacacttctgccttgattgcgatatttacatccatgag
agcttgcacaattgcccaggttgcgagagtcagcgtagttcttcatag
DBGET
integrated database retrieval system
