Oryza sativa japonica (Japanese rice) (RAPDB): Os05t0109600-01
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Entry
Os05t0109600-01 CDS
T02163
Symbol
Os05g0109600
Name
(RAP-DB) RNA binding protein PufA.
KO
K17943
pumilio RNA-binding family
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PUF
NABP
DUF2524
Motif
Other DBs
RAP-DB:
Os05t0109600-01
LinkDB
All DBs
Position
chr05:complement(join(522187..522585,520502..521763,519966..520107,519777..519884,519038..519250,518834..518944,518003..518197,517695..517869,517556..517599))
AA seq
882 aa
AA seq
DB search
MVTEMATRGEAAAAAAADRDMELFRSGSAPPTVEGAMASAAAAAGDVFLDDELRADPVYQ
SYYYSNAHLNPRLPPPLLSKEDWRSAQHRLRSSALGGIGDGRRQPAAAAQGDGLVGLPGI
DLDRQGSFSSIFQESSYQLDMGKQGADRNISDFLDSSRPQYALHRETSRAMGGLQSDSNI
QSLAEVQNNDSSAHTYASLLGSSLSRSASPDPELVRRVPSPCLPPIGVKVSADDKKNNGG
SSSFRRSSSAIGESDNLIAALSGMNLSSSGAASGQQTVTQSELYQDVDNVRKFLFDRQGD
QSNGNQQHSYMKHPEQGHFKAPDGYSANSPNSSMIRNQINAASFTSFDNLSAGSGFASPR
IGSRSPGGTLSSRQNLVGGSNFLNYNGIGSPNAATSLQTAIDPSYIQYLQAAEIAAQLAA
SCDDPLMASGHLGSSYMDLLGPQKAYASPLLQSQKNCGYYGNLGFGLGYSGSPLMSPVLP
SSPAAPGSPLRHGERSMRMQSGIRNFGGSFGSWNPDLGGKMNINMMPSLLEEFKSNKSKS
YELSEIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVFSEIMPQALTLMTDVFGNYVVQ
KFFEHGSPTQIKELADQLIGRVLALSLQMYGCRVIQKAIEVVGLDQQTKMVAELDGHVMR
CVRDQNGNHVIQKCIECIPQHAIQFIVSTFYGQVVMLSTHPYGCRVIQRVLEHCDDPTTQ
QIMMDEILQSVCLLAQDQYGNYVVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVI
EKCLAFGNPVERQILISEMLGSTNESEHLEVMMKDQFANYVVQKVLETCDDQQREAILTR
IKAHLNTLKKYTYGKHIVARVEKLVAAGEKRLGLQPACTSAA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggtgacggagatggcgacgcgcggggaggcggcggcggcggcggcggcggaccgggac
atggagctcttccggagcgggtccgcgccgccgacggtggagggcgcgatggccagcgcc
gccgcggccgccggcgacgtgttcctggacgatgagctccgggccgacccggtgtaccag
agctactactactccaatgcgcacctcaacccgcgcctcccgccgccgctgctctccaag
gaggactggcgctcggcgcagcaccgcctccgctcctccgccctcggcgggatcggcgac
ggcaggaggcagccggccgcggcggcgcagggggatgggctcgtggggttgcccgggatc
gacctcgatcggcaggggagcttctccagtatcttccaggagagctcgtatcagctggac
atgggtaagcagggcgccgaccgcaacattagtgactttctggattcttctcggccacag
tatgctctgcatcgtgagactagtagagctatgggtggtctgcagagtgacagcaatata
caaagcttggctgaagttcagaacaatgattcatcagcacatacatatgcctctctttta
ggatcatctctttctagaagcgcatctccagatcctgagcttgttaggagggtccccagt
ccttgcctccctccaattggtgtgaaagtcagtgctgatgataagaagaacaatggtggt
tcatcttccttccgtcgaagttcgtctgctattggtgaatctgataatctgatagctgct
ttatctgggatgaatttatcatcatctggagcagctagtggacagcaaactgtgacccag
tctgagctctaccaggatgttgataatgtccgtaagtttctatttgatcgtcagggtgat
caatcaaatggcaaccagcaacactcctatatgaaacatcccgaacaaggacattttaag
gcacctgatggttactctgcaaactcgcctaattcttctatgataagaaatcaaattaat
gctgctagtttcacatcgtttgacaatctgtctgctggatcaggctttgcttctcctagg
atcggttctaggtccccaggtgggactttatcttcaaggcagaatttggttggtggatct
aactttctgaattacaatggaattggaagtccaaatgcagcaacttctcttcaaacagcc
attgatccgtcatatattcagtaccttcaggcagctgagattgctgcccaactcgcagct
agctgtgatgatcctctcatggccagtggccatctgggaagttcttatatggatttactt
ggtcctcagaaagcttatgctagtccattgcttcagtcacagaagaactgtggctactat
ggaaaccttggatttggccttggttattctggaagtcctttgatgagtcctgttcttccc
tcttcccctgctgcacctggtagtccacttaggcatggtgaacgcagcatgcgcatgcaa
tcaggtataagaaactttggtggttcctttggttcatggaatcctgacctaggtggaaag
atgaacatcaatatgatgccttcactcctggaggaattcaagagcaacaaaagcaaatct
tatgagctctcagaaattgctggtcatgttgttgagttcagtgctgatcaatatggaagc
cgattcatacagcaaaagctagaaacggccagtactgaagagaaggacatggtcttttca
gaaatcatgcctcaagctctcacgttgatgaccgatgtatttggaaattatgttgttcag
aagttctttgagcacggaagccctacccagataaaggaattggccgaccagcttattgga
cgtgttcttgctctcagtcttcagatgtatggatgccgggttatacagaaggctatagag
gttgttggtttagatcagcagactaaaatggttgctgagctggatggacacgtcatgcgc
tgtgtacgtgatcaaaatgggaaccatgtaatacagaaatgcatagaatgcatccctcaa
catgctatccagttcattgtctcaacattctatggtcaagttgtgatgttatccactcat
ccatatggttgtcgggttatacagagggtgctggagcattgtgatgatcctacaacacag
caaataatgatggatgagattctccagtccgtttgcttgctggctcaagatcaatacggc
aactacgttgttcagcatgtactggagcacggaaaaccacatgagagatctgctattatc
gagaagttaattggacaaatagttcaaatgagccagcaaaagtttgcctcaaatgtcatt
gagaagtgcttagcctttgggaatcctgtagaacgacagattttgatcagtgaaatgctt
ggatccactaatgagagtgaacaccttgaggtaatgatgaaagatcagtttgcaaactat
gtggtgcagaaggtgctagagacttgtgatgatcagcagagggaggcgatccttacaagg
ataaaagcacatctgaacacgctgaagaagtatacctatgggaagcacatagtagcacgc
gtagagaagcttgttgctgctggagagaagcgactagggcttcaaccagcatgcaccagt
gccgcctga
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integrated database retrieval system
