Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0154225-00
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Entry
Os08t0154225-00 CDS
T02163
Symbol
Os08g0154225
Name
(RAP-DB) DEAD-box ATP-dependent RNA helicase 42.
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os08t0154225-00 (Os08g0154225)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os08t0154225-00 (Os08g0154225)
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Os08t0154225-00 (Os08g0154225)
Spliceosome [BR:
dosa03041
]
Complex A
U2 snRNP components
U2 related factors
Os08t0154225-00 (Os08g0154225)
Complex B
Os08t0154225-00 (Os08g0154225)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
RAP-DB:
Os08t0154225-00
LinkDB
All DBs
Position
chr08:complement(3115509..3117296)
AA seq
595 aa
AA seq
DB search
MEEEEVVVVVDEEESERRRQKMIEEEKKRLDEEMELRRRRVKEWQEQKRLEEEEAKRREQ
EAAAGAGTPAAAAGADGDSNAGKKWTLDGEESDEEGYKEDSQNAEDDGGITADLPSEVND
ANVAAPMEEDEIDPLDAFMSSMVLPEVAKLETAVASMESMPASNMGDKNGKSAKDAVSNG
DKKGQKKAMGRIMQGDDSDSDYDDDDDDEGGSKDEDDEEFMKRVKKTKVEKLAIVDHSKI
EYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTI
KKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPI
GLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMI
DILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAIFPRQV
EILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWFDRGKILVFVH
SQDKCDSLLKDLFQRGYPCLSLHGGKDQTDRESTLADFKSNVCNLLIAGCELDVK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaggaggtggtggtggtggtggatgaggaggagtccgagaggcggcgtcag
aagatgattgaggaggagaagaagcggctcgacgaggagatggagctccgccgccgccgt
gtcaaggagtggcaggagcagaagcggttggaggaggaggaggcgaagcgccgcgagcag
gaggcggcggccggtgctggcactcctgccgcggccgctggggccgacggcgattccaat
gccgggaagaagtggactctggatggtgaggagtctgatgaggagggatacaaggaggat
agccaaaatgcagaagatgacggtggcatcactgccgatttgccgagtgaggtgaatgat
gcaaatgttgctgctcctatggaggaggatgagattgatccgctcgatgcattcatgagc
tccatggtgttgccggaggtcgcaaagctggagacggctgtggcatcaatggagagcatg
cctgcttccaacatgggtgataagaatggtaaaagtgcaaaggatgctgtgagtaatggt
gataagaaagggcaaaagaaggcaatggggagaattatgcaaggggatgattcggactct
gattatgatgacgacgacgacgatgagggtggatcgaaagatgaggatgatgaggagttc
atgaaacgtgtcaagaagacgaaggtagaaaagctggctattgttgaccattccaaaatt
gagtaccagccattccggaagaatttgtacattgaggtgaaggatatcacaatgatgaca
ggagaggaagtggctacctacaggaaaaatctggagctcaaggtacatgggaaagatgtg
cccaagccaataaaaacatgggtgcagagtgggctgaccagcaagctccttgacaccatc
aagaagcttggttttgagaagccgatgcctatacaggcacaggcattaccaatcataatg
agtgggcgtgattgtataggaattgcaaagactggatcgggcaagactctagcgtttgtc
ctgccaatgctcaggcatgtcaaagaccagccgcctgttgtgcctggagatggccctatt
gggctcattatggctcctaccagagagctcgtggtgcagatacattcagacattaagaag
ttcgcgaagtcgcttggcatcaactgtgtagctatctatggaggttcaggtgttgcccag
cagatcagtgaactaaagaggggcgctgaaattgttgtttgtacaccgggcaggatgatc
gatatcctttgcaccagcagtggaaagattactaaccttcggagagttacattcttggtg
atggatgaagctgataggatgtttgatatgggctttgagcctcagattactcggatagtt
cagaatacccgcccagataggcagactgttcttttctcagccatttttccacggcaggtg
gagatactggcacgtaaggtgctgacaaagcctgttgagatccaggtgggtgggaggagt
gtcgtcaacaaagatatcacacaactggttgaggtgcggccagaaaatgagaggttcttg
aggctgttggagttgcttggagagtggtttgatagaggcaaaattcttgtttttgtccac
tcacaagataaatgtgattctctacttaaagacttgtttcagcgtggatatccatgctta
tctttacatggtgggaaagatcagactgaccgtgaatcaactcttgctgatttcaagagc
aacgtatgcaacttgctgattgctggttgtgaattagatgtgaagtag
DBGET
integrated database retrieval system
