KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os09t0566100-01
Entry
Os09t0566100-01   CDS       T02163                                 
Symbol
Os09g0566100
Name
(RAP-DB) ENTH/VHS domain containing protein.
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Os09t0566100-01 (Os09g0566100)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dosa03021]
    Os09t0566100-01 (Os09g0566100)
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os09t0566100-01 (Os09g0566100)
Transcription machinery [BR:dosa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     Os09t0566100-01 (Os09g0566100)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     Os09t0566100-01 (Os09g0566100)
SSDB
Motif
Pfam: CID zf-C2H2 zf-C2H2_11
Other DBs
RAP-DB: Os09t0566100-01
LinkDB
Position
chr09:complement(join(22572137..22572448,22570682..22570783,22570274..22570532,22569941..22570071,22569269..22569841,22567181..22569013))
AA seq 1069 aa
MRASAAPMETSASARRSAAPDPKKPRLAQHPAPRDPRSYPAAANGNAPAVDQAQVDELVA
QYRTALGELTFNSKPIITNLTIIAGENLHAAKPIASLICANILEVPSEQKLPSLYLLDSI
VKNIGKDYVKHFSARLPEVFCKAYKQVDSSIHNSMRHLFGTWKGVFSPTSLQVIEKELGF
QSSTNGSSGAAPSKPDSQSNRPSHSIHVNPKYLEARQQLQQPNKGQGILGAGAKTTTISD
SGDDIERTSRTAVDRGAGRRLDALNPRTNVQRAQRDPFSNPIHEKQDRDMRVLGFSNISQ
QAVVGTGLVRAKPKGQDGSGGPYYTAGVGSSEEQFDRRSNFYANKDVRPSGSVRLDGALL
PTPVSNSDRIGRPSSNKSWKNSEEEEYMWDDVRSQGADYGGTSSTRKREWIPDDGNVGSF
QRVKWAEAGGPLDPDQHKLDSFQRFGNATGQDRRITPYMDHEEYLHGKHEVEPRIDREML
PEGQPFSSSRGSSLWLSHEKPLPDIVSDPRISAFSNQPADRPTIYAGTLSTSITSSVPVG
LSAAYAGRSSLESAATRSTETIGQQKNRYWSTSSPPVQSPSASFARQSSPSPVELDYSSK
PFSQLGQNSLEDYNQRTHALAQNLALSQGRPNLLGAPSHASQQIEKHPSLLQSKPHLRTL
DQPQANFSPENSSSVFKSSIQLPISVGVGHRQPEEVSLSSDSTLMSSDHLSASSLLAGLI
KSGFKPNDPNDLASLRAQPPLPSGPPPHVSTSFSAASSSLHLPASDTLKSQAPNSLRPPL
PPGLPLSSPFVCPTTQTSEKAAPLSSLLSSLVAKGLISSPSADSTVAIPQQPCKSELNTP
DDTASAPSLPFVQPSVKKETSNQNSSAPSKVLVHQPVEIKKEPAEIKMVDLIGFDFKPEM
LRKYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHTACHGSKQSETRKTGIAPEKWYPS
KNNWVDRSHEVQNSALESASSVADLSSEEEVCEFMVPADESQIICALCGESFDDIYSIEK
DNWMYKDAVYFDSSKTEGSSGDSAESKERVPIVHARCMSISSNDGMEVD
NT seq 3210 nt   +upstreamnt  +downstreamnt
atgcgcgcctccgccgcccccatggagacctccgcctccgcccgcagatccgccgccccc
gaccccaagaagcctcgcctcgcccagcaccccgcccccagggatcccagatcttacccc
gctgccgccaatggcaacgcccccgccgtcgaccaggcgcaggtggacgagctcgtcgcg
cagtaccggaccgccctcggggagctcaccttcaactccaagcccatcatcaccaacctc
accatcatcgccggcgagaacctccacgccgccaagcccatcgcctctctcatctgcgcc
aacatcctcgaggttccaagtgaacagaagctaccatctctgtatctacttgacagtatt
gtcaaaaatattggaaaagattatgttaaacatttttctgcaagattacccgaggtgttc
tgcaaagcatataaacaggttgattcttccatacacaatagcatgagacacttatttgga
acatggaaaggagtgttttccccaacttcactccaagtgattgagaaggaacttggcttt
caatcatctactaatggatcatcaggcgctgcaccatcaaagcctgattctcaatccaat
cgtccatcccacagcattcatgtgaacccaaaatatttggaagcaaggcagcagctccag
caaccaaataagggacaggggatactgggagctggggccaagactactacaatttccgat
tctggtgatgatattgagaggactagcaggacagctgttgatagaggtgcagggcggcgg
ctggatgctttgaaccctaggactaatgtacagcgggcacaaagggacccttttagcaat
cctattcatgaaaagcaagatagagatatgagggtccttggattctccaacatttcgcag
caggctgttgtgggaactggtcttgttcgtgcaaaacctaaaggccaagatggaagtggc
ggaccatattatactgctggagttggttcttctgaagaacagtttgacaggcgcagcaat
ttttatgcaaacaaggatgttagaccatcaggatctgtacgtttagatggtgcacttttg
ccaactcctgttagtaattctgataggattggtaggccgtcatccaacaaaagctggaag
aattctgaggaagaagagtacatgtgggatgatgtacgttctcaaggagcagattatgga
ggtaccagttcaacaagaaaaagagaatggatacctgatgatggaaatgttggaagcttt
caaagggttaaatgggcagaggcgggaggacctttggaccctgaccaacacaaattagat
agcttccaaagatttggaaatgcgacgggtcaagatagaagaattacaccatatatggat
catgaagagtaccttcatggtaagcacgaagtggaaccaagaattgatagggaaatgctc
ccggaaggacagccgttctcgtcatctcgtggttcctctctctggttatcccatgaaaaa
cctctcccagacattgtgtcagatcctaggatatcagcgttttccaatcagccagcggac
aggcctaccatttatgctggtaccttgtcaacaagtatcacttcatctgtacctgttggg
ttgtcagcagcctatgctggacgatcaagcctagaaagtgcagcaacaagatcaactgag
actataggacagcaaaagaatagatattggtcaacttcctcaccacctgtacagtcacct
tctgcatcatttgcacgccagagttcccctagtcctgtagagcttgattactcttccaaa
ccattctcacagttgggtcaaaattctctggaagactataaccaaagaactcatgccttg
gctcaaaaccttgcactttctcagggcagacctaatctgctgggtgctccttcacatgcc
tcccagcagattgaaaagcacccttccttgctgcagtcaaagccacatctcaggacactt
gatcaaccgcaggcaaacttttcacctgaaaattcatcttcagtatttaaatcttcaatc
cagctgcctatttctgttggcgtggggcatcggcagcctgaagaagtatctctgtctagt
gattccactcttatgagctcagatcatttaagtgctagcagtttgttggctggccttata
aagagtggattcaaaccgaatgaccccaacgatcttgccagtttgagggcacaacctcct
cttccaagtgggccacctcctcatgtttcgacatctttttcagctgcttcctcatccctg
caccttccagctagtgatactctgaagtctcaggcgccaaactctctgcgcccacctttg
ccccctgggttgccactttcgtcgccgtttgtgtgcccgacaacacagacctcggagaaa
gctgcaccactctctagtcttctcagttccctggttgcaaagggattgatttcttcgcct
tctgcagattcaactgtagcgatcccacaacagccctgtaaatcagaactgaacacacca
gatgacactgcttcagctccatctctgccttttgtccagccttcagttaaaaaggaaaca
tccaatcaaaactcatctgccccatctaaggtgctggtgcatcaacctgttgaaatcaag
aaggaacctgcagaaatcaagatggtagaccttattggctttgacttcaagcctgagatg
ctccgcaagtaccatgcacatgtgatcagcaccctctttgatgaccaaagtcatcaatgt
aatacatgtggtctaagattcagtcttgaagaagagctctctgtgcacactgcgtgccat
ggatcgaagcaaagtgagactagaaagactggtatcgcacctgaaaaatggtaccctagc
aaaaataattgggtcgatagatcacatgaagtgcagaacagcgccctggagtctgcttct
tctgttgcagatttgagctctgaagaggaagtttgtgaattcatggttcctgcagatgag
agtcagattatctgtgcactctgtggagagtcatttgatgacatttattccattgagaag
gataactggatgtacaaggatgcggtctattttgattcttcgaagacagaaggcagcagt
ggcgacagtgctgagagtaaagagcgtgtacccatagtgcatgcaagatgtatgtcgata
agctcaaatgatggcatggaggttgattag

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