Oryza sativa japonica (Japanese rice) (RAPDB): Os12t0102400-01
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Entry
Os12t0102400-01 CDS
T02163
Symbol
Os12g0102400
Name
(RAP-DB) Zinc finger, RING/FYVE/PHD-type domain containing protein.
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os12t0102400-01 (Os12g0102400)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dosa03000
]
Os12t0102400-01 (Os12g0102400)
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os12t0102400-01 (Os12g0102400)
04121 Ubiquitin system [BR:
dosa04121
]
Os12t0102400-01 (Os12g0102400)
Enzymes [BR:
dosa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Os12t0102400-01 (Os12g0102400)
Transcription factors [BR:
dosa03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
Os12t0102400-01 (Os12g0102400)
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os12t0102400-01 (Os12g0102400)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Os12t0102400-01 (Os12g0102400)
Ubiquitin system [BR:
dosa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
Os12t0102400-01 (Os12g0102400)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
PcfJ
Nup35_RRM_2
zf-UDP
Motif
Other DBs
RAP-DB:
Os12t0102400-01
LinkDB
All DBs
Position
chr12:join(106119..106120,106421..106520,106598..106725,106939..107101,107198..107310,108026..108109,108193..108241,108331..108422,108680..108809,108906..108982,109058..110676,111024..111221,111287..111825)
AA seq
1097 aa
AA seq
DB search
MMTMSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACR
TRYDKDRIVKMAATCDRTVVEKNVDKKQKTQKVKSKAAVTVEAKKHLASVRVIQRNLVYI
IGLPANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAI
RCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIIS
AYTRSRVPQMASNVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPNS
SSGRSTLPPAASWGHRDLNTRTTATGVASSQSLTKSKADPQSNSFSSSSTVSSTKLPSSW
NDDTSTVPKMTEGRDSLSKTLKPYKPGIAKETQAVTSLESSLDIDFSTIPSAWNDDDVTS
DGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSKSTTSPKKDIAVNSTRQSPLNCVSS
PSVSKSEVKDGDGDYQVTNMASKTSTLVIRKDQSNQAAIDTATEDTRSESTDIDRLSVGV
SSVTLSRKDGVQSIAENQQPDAILSTSVVVPFSQNLKLAECNDSTCQPSSDKHRDWCSDI
QSSVSPQLNDIESYAVATDKSHGRVLDAADQASSSPYVHFPNTAPISLWNGKEINHTSTS
DRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMKNHQPGAVGAVRIDNI
GSFDKAVSVNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWKTK
TSNSESRFSFARQDNQGSLLDSSMRNYKSEQNFSLPSQNSHGNIYQSGIAFQSPEEGFSK
SNSLTMLDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPP
PGFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLARQTSDIEFVDPAILAVGKGRM
PGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNMPSHQNVGFAEHVQDAFNPMNDNYL
ASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSRMLYPTEAN
NFHMLGSNDLYNRAFGL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatgagcgacgatggagaccgcacctgcccgctctgtgctgaggacatggac
atcactgaccagcagctcaagccctgcaaatgcggctatgagatttgtgtctggtgctgg
caccacatcattgatatggctgagaaagaggacactgagggccgctgccccgcatgccgc
actcgctatgacaaagataggattgtcaagatggctgccacttgtgacaggacggtagtg
gagaaaaatgtggacaagaaacagaagacccaaaaggtcaagtcaaaggccgcggtaact
gtggaagctaagaaacatcttgctagcgtcagggttatccagagaaacctcgtgtacata
attggactacctgcaaatttatgcaacgaaagcatacttgagcgcagggaatactttggt
cagtatggcaaggttctgaaagtttcagtttctcggccgactggggctccttcccagcag
gcaccaacaaacaacagtatcagcgtatatattacatatgccaaagaagaagaggccatc
aggtgtattcaagctgtacacaattttgttttggaagggaaagtgttaagagcgtgcttt
ggtactacaaagtattgccatgcatggctgcggaacatgacctgtggaaatccagattgt
ctctatttacatgatgtaggaagccaggaagatagtttcactaaagatgagataatctca
gcatatacaaggagtagggttccccaaatggcgtctaatgtttctcaaagacgcgcaggg
actgtattacctcctccagcagaagatttctcatatagtgcagtggttgcagctaaacat
ccaatcaagaatggaataactaatactgcaaatcaatccaggctttcgcctccaaacagt
agttctgggagatccacacttccaccagctgcttcatgggggcatcgcgatttgaatacc
aggacaacagcaactggggtggcatcgtcacaatctcttactaaatcaaaagcagatcct
caaagtaattcattctcgagttcttcgactgtttcaagtacaaaactaccttcttcatgg
aatgatgacacaagcacagttccgaaaatgacggaaggacgagatagtttgtctaaaacc
ttgaagccatataagcctggtattgcaaaggaaacccaagctgtaacatcactggagtca
tcgcttgacatagacttctctaccataccttcagcttggaacgatgatgatgtcacatca
gatggcatgtcaaaaggaagtgacgagaagcaggttgtaaatgacaatggaaagtttgaa
tgttcagtttcttcaaagccagctgaatcagggcatcttacatcgaagtcaacgacatca
ccaaagaaagacatcgcagtaaacagtaccaggcaaagtcctctaaattgtgtatcaagt
ccatcggtttctaaatcagaagtaaaggatggtgatggtgattaccaagtaaccaacatg
gcttctaaaacatctactttggtaattagaaaggaccaatctaatcaagcagctattgac
acagcaaccgaagatactagatctgagagcacggatattgataggctttctgttggagta
tcttcagtaacattaagcagaaaagatggggttcaaagtattgccgaaaaccaacaaccg
gatgcaatcctaagtacttcagttgtggtgccctttagtcagaatttgaaacttgctgag
tgtaatgattctacatgtcagcctagttcagataagcatcgtgattggtgttcagatatc
cagagtagtgtgtctcctcagttaaatgacatagaaagttatgcagtagccactgataaa
tctcatggtagagtgctggatgctgctgatcaagcttcgtcttcaccatatgtccatttc
cctaacactgctcctatttcactgtggaatggtaaagagattaaccatacatcaacaagt
gatagaacttccacaatgatgcaacctgggctgttatcttcagttgacagcacttctacc
atgttaaatggacatcaagaagggctagggactatatatgcacctggtaaggtttctgaa
catcctagaatgaaaaaccatcagcctggagcagttggtgcagtgagaattgataacata
ggcagttttgacaaggctgtaagtgtaaataaggatgagagcagcataattgctgatatt
ttgtctttggagtttgatccatgggatgagtcgtattcaacggctaacaattttgctaag
atgcttagtgcatctgaaaagaacgatgtgctttttgatgcacgttcatggaaaacaaaa
accagcaatagtgagtctagattttcatttgctagacaagataatcaaggaagcctccta
gattcatctatgagaaattataaaagtgagcagaatttcagtttgccatcccagaattct
catggaaacatttatcagagtggcattgcatttcaatctcctgaggaaggtttctcaaag
agcaactctcttactatgttggatatgctagctaccggcacatcaaagcctaaagtatcc
gcgcctcctggattttcagcaccagcaagagttcctactgggttttcttctggattttca
tcccatgaggggttgaatccacctccaggattttcatctcataatgggcctaatccccct
cctggattttcttctcagggtgggtctaatcagatctatggttcggcatactcagaaact
cgcccatttgatgatcttttgggtataaatactagccattatcaaccacagttagctaga
caaacaagtgatatagaatttgttgatcctgctatattggctgtgggtaaagggcggatg
cctggaataagtgattcagggttggagatgaaaacttcccatacttttccttcgcagttg
caaacatcaaatgatccaaggtttcaattacttatgcagcagaacatgccttcccatcaa
aatgttggatttgcagaacatgttcaagatgcattcaaccctatgaatgataattatctt
gcatcccgacttatacctcagaaccatggttctctatcctcttacacacagatgtcactc
caacaacctagaagctcacatcttacaaatggtcattgggatggctggggtgatttgaga
caagggaataatgtttccatgcctgacatgtcaaggatgttatatccaactgaagcaaac
aacttccacatgctgggttcaaatgatctgtataacagagcttttggactgtga
DBGET
integrated database retrieval system
