Dendroctonus ponderosae (mountain pine beetle): 109544082
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Entry
109544082 CDS
T04899
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109544082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpa03021
]
109544082
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109544082
Transcription machinery [BR:
dpa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109544082
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109544082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
109544082
NCBI-ProteinID:
XP_048526467
EnsemblRapid:
LOC109544082
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MTTPEEIKTEYTSSLADLTFNSKPLINVLTMLAEENLPNAKTIVEAIEEHLYKVATDVKL
PILYLIDCIVKNVGETYTGLFSQNIVSTFCTVFKKALLSKVDEKTRLEMFKLRQTWNDVF
PQMKLYAIDVQIHQIDPAWPVTAQPTNSIHLNPKFLKTTPATTKSKVAAASPIEVVTPTA
PVLPTKPVSADLDKETRLMQEQLMQKQKELLELQRKTLELEVLQTQVKLQEQMKAGGVPS
VATNILLKPEVAKQFLPDAVGKPRPTDMINSLVQKPHTNQLKINPVNSALAAARPIRDPR
LLRQQQDKQTLDNLSQQTTGSAGMLPNSTVLDTNKHITNKVGVRNFSKDPRLSSRNDKKN
RNASKTRDDSSLIRDSDPSQKVDKNSRADFDKSINDSRFTSSSNSNLSSASSNNLHPMSK
NKRVPGKNRKRDKPETKRNHDFDTTTFPNKREKVSPKEEEKRSSDSKQTSSTFKNVKGKS
RNYVRRNLVDSPPVQQDDDDLTASSNQSDKNDKNSSAENLIVKQKSPEASTHVSPISSMD
VDLRKSALTSTKKRSSETSEPPAKRKSFDVLFGSEDTDLRQLPMHADSERKATVIERPPT
PPPPIISSKKDATVVQEMTSLAPKKSNFDAVRAKLANATNREKVMNKSFHKNKIQQTSTD
KDLRPISLQISSEDEKAIRSGHMTSEQEKQFLNKFLSQIEQDKLRQAKKKDHEEALVDMS
LQEISDEDFGSDSEDSPKASLSHRAIPFNDKDERLRMHMPGPMGQVQRADSVSSTSDNGS
YMSKGDNRRTRFRGGSDWRGRGRVPLQGPQPRPPIRPWLHQQQHPRWGGSFPDDSSRSPI
AISPSEDLEMTIVHEENKTLNIDGIPRDIRIYNETAIIFINYDDPREISFQSGARRVIFN
NKETYLLMFGNDYTECTINNFPFRVKLGVPSREIFINDLGFECFFGGPPVHICVSSINMT
VQLDGPLPQVKIGEVKRTDLVVGKINLIINATLMIPVFLDGKLQTFMVEGEPCTIKFVDA
LKRVLINDVPFNVEFGGLPKPCIIHGKKHFIRFSVLPKGIRPGFVRIKDMEGEEGSSPVR
DETNIQPVLSGPLEAEPLRPDTSKLNQARGHQSPDNGRNSPGFFNNILQTGLGNLDVISN
VLSQSLTPAPSTGGYQVELPGLEPSATPAVSSTSTINVPAPNPTLNINELFQKLVDSGFL
TTQDNKQSDVAITNPPVFSVPQLTLPKEVASFVGNGKGVQKPYGFQDQTSSKPQKRNIST
ALKPVSFGRPETLKIRQGALYAKLYTGMQCSSCGMRFSPEASMWYSQHLDWHFRQNRKGK
KNARVANSRKWYYSLADWKNYEELEDLEEREKNYFDQQQQVEVAEEAEEEVEIPSVTADP
GTTDERCYVCRDVFEQFFNEEKEEWHLRNSVRIDEKTYHPICYEDHQKSSMDQSRTEDET
PSKLIPGLEIVLDDDDEELPGTLDEVVSLMDDAEETVPEDAPSPVKDEEVKEDDDDDDVI
LNEVAPIKIVVDDDDDDEELPAEKNFSSQPVVIKKEKNLEYDDGFMDVGEIVSLQGVGQV
KIKSEPVDDDMQPPSLNTDEHNLVEEDPIDLNVDNEEVSVSKPVRSRPELIASMDGNVEL
VATTPMPVPTTSSGGPKIKINISKPLPVITPKDISTGSSDSDVSKSIEVPMEEPEILRYK
PALQNVPLKKMPPVKKGHEMMGLCSIM
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccggaagaaattaagaccgaatatacgtcgagtttggccgatttgactttc
aatagcaaaccgttgataaatgtattaacaatgttggccgaagaaaacctgccgaatgcg
aaaacaatagtggaagctattgaagaacatctctataaggtcgcaacggacgttaaattg
ccaattttgtacctcattgattgtatagtgaagaacgtcggagaaacatacacgggctta
tttagtcagaacattgtgtctacattttgcacagttttcaagaaagcccttctttctaag
gtggatgaaaagacccgattggaaatgttcaaactacgacaaacatggaacgacgttttc
ccacaaatgaagctgtatgctatcgatgttcaaattcatcagatcgaccctgcctggcca
gtaactgcccaaccaacaaatagtattcatctgaaccccaagtttctcaagactactcct
gccacaactaagagtaaagttgctgctgcctctccaatagaagttgttactccaacagct
cctgtattgccaaccaagccggtttccgcagatttggacaaagaaactcgactgatgcag
gagcagttgatgcaaaaacagaaggagttattagagctacaaagaaagaccttggaactg
gaagtgttgcaaacgcaagtgaagttgcaagagcagatgaaggctggaggagtgccttct
gtggccacaaacattttattgaaaccggaagttgccaagcagttccttccagatgcagtt
gggaaacctaggccaacagacatgataaattccttggttcaaaaaccccataccaaccaa
ttaaagattaatccagtgaactcagctttggctgcagctaggccaatcagagatccacgt
ttgttacgtcaacaacaagataaacaaacattggataatttatctcaacaaaccaccggt
agtgctggcatgcttcccaacagtacagttcttgacaccaataaacatataactaataaa
gtaggtgttagaaattttagcaaagatcctcgtttgtccagtaggaatgacaagaaaaat
agaaatgctagtaaaacgcgcgatgattcttcgcttattcgcgactcggatcctagtcaa
aaagtcgacaaaaactctcgtgccgactttgataaatctataaacgattcgaggtttact
tccagctccaacagcaatttatctagtgctagttctaacaatttacatccaatgtctaaa
aataaacgggtacctggtaaaaatcggaaaagggacaaaccagaaacaaaacggaatcac
gattttgacacgaccacctttccgaataaacgcgaaaaggtgtcccccaaggaggaggag
aaacgctccagtgactcgaaacagacatcttccacttttaaaaatgtaaagggtaagagt
cgcaattatgtcaggcgcaatttggtggacagccccccggtgcagcaggatgatgatgac
ctcacagcttcatctaatcagtcagacaagaatgacaaaaattcgtctgcagagaatcta
atagtgaagcagaagtcccccgaagcaagcacacatgtttcaccaattagttccatggat
gtcgacttacggaagtcagcactaacttcaaccaagaagagatcgtctgaaacatcggag
ccaccggcgaagagaaaaagctttgatgtgctgtttgggagcgaagataccgacttgcga
cagctacctatgcacgctgattctgaacggaaagctaccgttatagagcgaccgcctacg
cccccaccgccaatcatatcctccaagaaggatgcaaccgtcgttcaggagatgacatct
ttagctcccaagaaaagtaacttcgatgccgtcagagccaagctagcgaatgctaccaat
cgggagaaagtgatgaacaagtcattccataaaaacaagatccaacaaacttcaactgat
aaagatttgcgaccaataagtcttcagatatcatctgaagacgagaaggcaattcgatct
ggtcatatgacaagtgagcaagagaagcaattcctgaataaattcttgagccaaatcgag
caagataaattgcgtcaagctaagaaaaaagatcacgaagaagcgttagttgatatgtct
cttcaagagatcagtgatgaagatttcggctcggattcagaagatagcccaaaggcttct
ttatctcatcgtgcgattccattcaatgataaagatgagaggttgcgcatgcatatgcca
ggcccgatgggtcaagtgcaacgtgccgatagtgtgtcatccacatcagacaatggatct
tacatgtcaaaaggagataatcggcgaactcgttttagaggcgggagtgattggagagga
agaggccgtgtacctcttcaaggtcctcaaccaagaccaccaataagaccgtggttacat
cagcagcaacatcctagatggggaggatcttttcctgatgactcttccagaagtccaatc
gcaataagtccgagtgaagacttggaaatgacaatagtacacgaggaaaataaaacactg
aacattgacggaattcctagagacattcgaatctataatgaaaccgccattattttcatc
aactatgatgaccctcgtgaaatttcgttccaaagcggtgcgcgaagagtgatttttaac
aacaaagagacgtatttactaatgtttgggaacgattacacggagtgtacaataaacaat
tttccattccgcgtgaagcttggagttcctagccgcgaaatatttattaacgatctcggg
tttgaatgcttttttggtggaccaccagttcacatctgtgtgagcagcattaatatgaca
gtgcaattagacggacctcttcctcaagtcaaaataggagaggtcaagagaaccgatctt
gtggtcggcaaaatcaatctcatcatcaacgcgaccctaatgatccccgtgtttctcgac
ggcaaattgcaaacgttcatggtggaaggcgagccgtgtacaataaaatttgtagatgca
ttgaaaagggtgttaataaatgatgtgccatttaatgttgaatttggtggtctccctaaa
ccttgtattatacacggcaaaaaacattttatacggttttcagttttgccaaaaggcatc
agacctgggtttgttcgaattaaagacatggaaggggaagaaggttccagcccggttcga
gatgaaaccaacattcaacctgtactatctgggcctttagaggctgaacctttgcggcct
gataccagtaaattgaatcaagcgaggggacatcagtctccagataatggacgtaattcc
ccaggcttcttcaacaatatattgcaaaccggtttaggtaaccttgacgttatatctaat
gtgttatcgcaatcgcttacgccagctccttccactggaggctaccaagtggaacttcca
ggtcttgaaccaagtgctaccccggcagtgagtagcacttccactatcaacgtaccagcg
cccaaccccacgctcaatataaatgagttgtttcaaaaattggtcgattccgggtttctc
actactcaggacaataagcaatctgatgtcgcgattaccaatccacctgttttttccgtt
ccacaacttacacttccgaaagaagtcgcttcgtttgtaggtaatggaaaaggagttcag
aagccctacggttttcaagatcagacctcatcgaaaccccaaaagcgtaacatatcaact
gcattgaagccggttagttttggtagaccggaaaccttaaagattcggcagggtgcttta
tatgctaaactttatactggcatgcaatgctcaagttgtggtatgcgattttcgccagag
gccagcatgtggtacagtcagcatttagattggcatttccgacaaaatcgcaagggaaaa
aagaatgcacgagtcgcaaacagccgaaaatggtactattcattggcagattggaaaaac
tacgaggagttggaagatttggaagaaagagagaaaaattatttcgatcaacaacaacaa
gtagaggtggccgaagaagctgaagaagaagtggaaattcccagcgtaactgcagaccct
gggactaccgacgaacgttgttacgtatgcagggatgttttcgagcaattcttcaacgaa
gaaaaagaagaatggcatttgcggaattctgtgagaattgatgaaaaaacgtatcatcca
atctgctatgaagaccatcaaaaatcgagtatggaccaaagtaggactgaggacgagact
cctagtaaactgattcccggtttagaaattgttttggatgatgatgatgaagaacttcct
ggaacccttgatgaagtagtatcgctaatggatgacgctgaggagactgtacctgaagat
gcacctagtccagtaaaagatgaagaagtgaaagaagatgatgatgatgatgacgttatt
ttaaatgaagtcgcacctatcaagatagttgttgatgatgacgatgacgatgaagaactt
ccggccgagaagaactttagcagtcagcctgttgtcattaagaaggaaaagaatcttgaa
tatgatgacggttttatggatgtaggcgagatcgtatctttgcaaggtgtgggacaagtt
aaaattaagagtgaacctgtagatgacgatatgcaaccaccttctttgaacacggacgag
cacaacttagtagaagaagatcctatcgatctaaatgtcgataatgaagaagtgtctgtt
tcgaaaccggtgagatcccgtcctgaactgatcgcctccatggatgggaatgtggaacta
gtagcgactaccccaatgccagtgcccacaacaagttccggaggcccgaaaatcaaaata
aacatttcgaagccattgcctgtgataactcctaaagacattagtactggttctagtgat
agtgatgtaagtaagtccatcgaagttcctatggaggaaccggagatccttaggtataaa
cctgcgctgcagaatgtacctttaaagaaaatgcctccagtgaaaaaaggtcatgaaatg
atggggttgtgctctattatgtga
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integrated database retrieval system
