Dendroctonus ponderosae (mountain pine beetle): 109545498
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Entry
109545498 CDS
T04899
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109545498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpa03400
]
109545498
Enzymes [BR:
dpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109545498
DNA repair and recombination proteins [BR:
dpa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109545498
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
DNA_ligase_A_C
BRCT_2
DNA_ligase_IV
mRNA_cap_enzyme
BRCT
Motif
Other DBs
NCBI-GeneID:
109545498
NCBI-ProteinID:
XP_019771799
EnsemblRapid:
LOC109545498
UniProt:
N6TVZ2
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MDFKELCGLFNAVKDAKAAATKRKLVEECFSAWRSKHSKQCMFSILRLIVPKLDRERDSY
GLQEKKISRILIKMLALPKNTQQMLSIQDGCLPVGDYADMVYSVIHSYISQYKTTLTVLE
LNKCLDDIVARTNEAQVEEIVMKLFKKCSAEDSKWIIRIILKRLKLSIDENQILNCYHKD
GAHYYLSGSNLRKVCEVLYDKNINVHELDIEIFQPFRPMLSKRVDAAVFKKHFTNNKPFY
IENKFDGERFQVHMQNGAFKYFSRQAFDFTSTYGATFDDDNGLLTPKLKNLFQPFVQRII
LDGEMMLWNRYTNKYGSKGMELDVKKLKKDGKYQPCFCVYDIILLNDQLLTNRPLKERLA
MLGRVFKSQVPGTLIVSELSKVGTAEEIVDALNNAVDKEEEGIIVKDPTSVYKYSDRNSG
WFKLKLEYFQDTMHDLDVVVMGGKRASSTSSQLNSFIVGVQSGTTKTGGPLFLSFAKVSS
GLSDEQLHDLNSRFKTHGKLFDSNNHSSALVFGSEVPHYFIEPADSVVFVIRATELTRIN
NASYKTSYTLRFPRVLKVRTDKPINECLDMNQLLELAKQNKSVIKLNKRYIELDEILQIQ
TRRRKKRKIEVVKFESTRQISDLLEGYLFHVLNGDKDQLEALVRRAGGKVHYKIDHQVDI
VLVADYNAKAMEICKRRNHCDVIDAAWLRRVVQEGDLLPYKTLEIYCLGTSIKNCLSDAT
DRYGDSYTQEATMETLKHSVTLLRNLGEQPCFGQLLEIPPEKTFAPFKAFFDTHSDLENE
NSAVIYESLEDELEFKYYYGEVERCNRITADTNMVITNDWQRLDCIKEHLQRIHREDVEI
RHRSFLYE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaggaactgtgcggtttatttaatgctgtaaaagacgcgaaagcagcggca
actaaacgcaaattagtggaggagtgtttttctgcgtggcgttcgaaacactcaaaacaa
tgcatgttttcaatattgcggctcattgttcccaagctggaccgagagcgggactcctac
ggcttgcaggaaaagaaaatatccagaattctgataaaaatgctcgctctgcctaagaat
acccaacaaatgctcagcattcaagacggttgtttgccagttggagactatgctgacatg
gtctactcggttatccacagttatatatcccaatacaaaaccacgctaacggttctggag
ctgaataaatgcctagacgatatagtggccagaacaaacgaagctcaagtcgaggaaata
gtaatgaagctgtttaagaagtgttctgctgaagactccaaatggatcatccgcataatc
ctcaaaaggctaaaactgtctatcgatgagaaccagatcctaaattgctaccataaagat
ggggcacattattacctatcgggcagcaatttgaggaaagtgtgcgaagttttatacgac
aagaacattaacgttcacgaactggacattgaaatattccaaccatttcggcccatgctg
tccaagcgcgtggatgcagcagttttcaagaagcacttcaccaacaataaaccgttttat
atagaaaataaatttgacggggaaaggttccaagtgcacatgcaaaacggtgcgttcaag
tacttctcaagacaggcttttgatttcaccagtacatatggggcgacattcgacgacgac
aatgggcttctcactccaaaacttaaaaatctatttcagccattcgttcagcgaatcata
ctagatggggaaatgatgctctggaatcggtacacgaataaatatggctccaaaggtatg
gaattggacgtaaaaaagctgaaaaaagacggcaaatatcagccctgtttctgcgtttac
gacatcatactgttgaacgaccaattgctgaccaacaggcctttaaaagagagattggca
atgctgggacgtgtgtttaagagtcaagttcctggaactctaatcgtgagtgaactttca
aaagttggcacagcagaggaaattgtggacgctttaaacaacgcagtggataaggaggaa
gaagggattatagtcaaagacccaacttccgtatataaatacagcgacaggaacagcggg
tggtttaaactaaagttggagtatttccaggataccatgcacgacctggacgttgttgtg
atgggaggaaaacgcgcttcttccacttcatctcagctcaactcgtttatagtcggcgtt
caatcaggaaccacgaaaaccggtgggccgctgtttctatctttcgccaaagtcagcagc
gggctcagcgacgaacaactgcatgatctgaatagccgattcaaaacccacggaaaactg
ttcgatagtaataatcacagcagcgctttggtttttgggagcgaagttccccattatttt
atcgaaccggccgattccgtagtgtttgtcatccgagcaaccgaattgacgagaatcaac
aacgcctcatataaaacgtcttacactctaagattcccaagggtgttaaaagtgcgcacc
gataagccaatcaatgaatgccttgatatgaaccaacttctcgaactggccaaacagaat
aaaagtgtgattaagctgaacaagcgttatattgagctggatgagattctgcaaatccaa
accaggagaaggaagaagcggaaaatcgaagtggtaaaattcgaaagcactagacagatc
tccgatctgctggagggttatttatttcatgtgttgaatggcgacaaggaccagctcgag
gctctagttagaagagccggcggaaaagtgcactataaaatagaccatcaggttgatata
gtcctggtggccgattacaatgcaaaggccatggaaatttgcaaaagaaggaaccattgc
gatgtaattgacgctgcgtggttgcgcagggtggttcaagagggagatttgctgccatat
aaaacactggaaatctactgcttgggcaccagcattaaaaactgcttaagcgacgccacc
gacagatatggcgacagttatactcaggaggccactatggaaaccctcaagcattcagtc
acacttctgagaaatctcggggaacaaccatgcttcgggcagctgctagaaatcccgcca
gagaaaacgtttgctccatttaaagcgttttttgatacacacagtgacctagaaaacgaa
aactcagcggttatctacgaatcgctcgaggatgagctggagttcaagtactactatggg
gaggtcgaacggtgcaatcgaattactgcagacactaacatggttataacaaacgactgg
cagcggctggattgtataaaggaacatcttcagcgaattcaccgggaggacgtagagatt
agacatcggagttttttatatgagtga
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