Dietzia psychralcaliphila: A6048_14005
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Entry
A6048_14005 CDS
T05437
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dpc
Dietzia psychralcaliphila
Pathway
dpc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A6048_14005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpc03400
]
A6048_14005
Enzymes [BR:
dpc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A6048_14005
DNA repair and recombination proteins [BR:
dpc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A6048_14005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
ALGX
Motif
Other DBs
NCBI-ProteinID:
AWH96419
UniProt:
A0A2T5AUP8
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Position
3057913..3060588
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AA seq
891 aa
AA seq
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MASKGAKESVEVDGRTVRFTHPDKVLYDATGTTKADVLEYYLAVAPHLMAYAGQRPVTRK
RWPDGTEDKSFFEKNLPSHAPDWVSRVAIEHSSRTVTYPVLDSPATLAWFAQQAALELHV
PQWTLSDGEPGRTRRIVIDLDPGEDVDLDTTAKVALRVRDFLSEAGLDAFAVTSGSKGIH
LYARLDKAVSSKGASAVAKQIAQSLAKQTPDLVTATMKRSIRDGKVFVDWSQNSGAKTTV
APYSLRGRAEPWVAAPRSWEELADGGLKHLHWDEMLKRLESEGDLLEGLEGPTKRGGASK
KDAAKKTPARKSSASREKKSGSSKKSSSSSDDGDPERGGSDSDSADSRGSGSGSADPGGD
DSIRAAVKEGCDAGPTDPDAVVTSLDEYRRKRDRRKTPEPFDGEVDTDREDGDGPIFVIQ
EHHARRLHFDLRLEHHGVLASWAVPKNLPTEPKDRRLAVNTEDHPLGYETFEGTIPKGEY
GAGHMTIWDQGTYECEKWREDEIIVWLNGEQVSGRYVLVRTSAEKNQWIVQYMKDQSPDS
FYGGRDNPKSSYPDDDKRARGSDKTSDFGSDTSDMADLPDAPPLPMIPTSGSVTSLPGDK
WAFEGKWDGYRVTVATDGRQSRLMSRNGNPMDWLADGFPGLAQAIRKPAVLDAELVVPGP
DGVPEFSALAKQAAAEGDDSSIGPVHLFVFDVLGLDGVDLRRERWDRRREVLDLLTPALE
KVERVHVPGVLDGPGDRALDEAEEFGWEGIVAKRRDSHYQSGRRAKTWLKEKLLTTTEAV
IGGWRPGKGGRSGSLGSLLLGLPAQTGLTYIGRVGTGFSDRQGKALLEELEPLRRRSSPF
LEDLPSDARRDAIWVLPKLVVEVRHQGFTEDGVLRQSSWRDIRRDKLPGDL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaagggcgcaaaggaatccgtcgaggtcgacgggcggaccgtgcggttcacc
caccccgacaaagtgctctacgacgcgaccggcaccaccaaggccgatgtgctggagtac
tacctggccgtggcgccgcacctgatggcgtacgccggccagcgtcccgtgacgcgcaag
cgctggcccgacggcaccgaggacaagtcgttcttcgagaagaacctgccctcccacgcg
cccgactgggtgtcgcgggtggcgatcgagcactcctcgcgcaccgtcacctacccggtg
ctcgactcccccgccacgctggcgtggttcgcccagcaggccgcgctcgagctgcacgtg
ccgcagtggacactgtccgacggcgagccggggcggacgcggcggatcgtcattgacctt
gaccccggtgaggacgtggacctggatacgacggcgaaggttgcactgcgcgtccgagat
ttcctctccgaggcgggactggacgcctttgccgtgaccagcggatccaagggcatccac
ctctacgcccgcctggacaaggccgtctcctccaagggtgcctccgcggtggccaagcag
atcgcccagtcgctggccaagcagaccccggacctggtcaccgccaccatgaagcgctct
atccgtgacggcaaggtgttcgtggactggagccagaacagtggcgccaagaccaccgtg
gcgccctactcacttcgtggccgcgccgagccgtgggtcgcggcccctcggtcgtgggag
gaactcgccgacggcgggctcaagcacctgcactgggacgagatgctcaagcgactggag
tccgagggcgacctgctcgaggggctggagggacccacgaagaggggcggcgcgtcaaag
aaggatgccgccaagaagactcccgccaggaagtcatcggcatcgcgggagaagaagtcg
gggagcagcaagaagagctcgtcgtcgtcggatgacggggaccccgagcgcggcggttca
gattccgacagcgccgattcccgcggttctggttctggtagtgccgatcccggcggcgat
gactcgatccgcgccgcggtcaaggagggttgcgacgccggccccactgaccccgacgcc
gtggtgaccagcctcgacgagtaccgccgcaagcgggatcgtcgcaagaccccggagccg
ttcgacggcgaggtcgacaccgatcgcgaggacggcgatggcccgatcttcgtgatccag
gaacaccacgcccgccgcctgcactttgacctgcggctcgagcaccacggcgtgctggcc
tcgtgggcggtgcccaagaacctgccgaccgagcccaaggaccggcgcctggccgtcaac
accgaggaccatccgctgggctacgagacgttcgagggcaccatccccaagggcgaatac
ggcgccggccacatgaccatctgggaccagggcacatacgagtgtgagaagtggcgcgag
gacgagatcatcgtgtggctcaacggcgagcaggtctcgggccggtacgtcctggtgcgc
acgagcgccgagaagaaccagtggatcgtgcagtacatgaaggaccagtcgccggactcc
ttctacggtggacgcgacaacccgaagtcgtcctatcccgacgacgacaagcgagcccgc
ggctccgacaagacttctgattttggttcagatacttcggacatggccgacctccccgat
gctcccccactgccgatgatccccacctcggggtcggtgacatccctgcccggggacaag
tgggcgttcgagggcaagtgggacggctaccgcgtgaccgtggcgaccgatggccggcag
agccggttgatgagccgcaacggcaacccgatggactggctggccgacggcttccccggg
ttggcgcaggcgatcaggaagccggcggtgctcgacgccgaactggtggtgccgggcccg
gacggtgtgcccgagttctccgctttggccaagcaggccgccgcggaaggagacgactca
tctatcggcccggtgcacctgttcgtctttgacgtgctgggactcgacggcgtggacctg
cgccgggagcggtgggatcggcgtcgcgaggtgctggacctgttgacgccggcactcgag
aaggtcgagcgggtgcacgtgccgggggttctcgacggccccggcgaccgcgcactggac
gaggcagaggagttcggctgggagggcatcgtggccaagcgccgggactcgcactaccag
tcgggcaggcgggccaagacgtggctcaaggagaagctgctcaccaccaccgaggccgtc
atcggcggctggcgaccgggcaagggcggacgctccggttcactgggctcactgctgctc
ggactgcccgcacagaccgggctcacctacatcggccgcgtgggcaccggcttctccgac
cgacagggcaaagctctgctcgaagagctcgaaccgctgcgccgccgctcgagtccgttt
ctcgaggacctgccgtccgatgcccgccgtgacgccatctgggtgctgcccaagctcgtg
gtggaggtccgccaccaggggttcaccgaggatggcgtgctccggcagtcgtcgtggcgg
gacatccggcgggacaagctgccgggggatctatag
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