Dyadobacter pollutisoli: ON006_16645
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Entry
ON006_16645 CDS
T09794
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dpf
Dyadobacter pollutisoli
Pathway
dpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ON006_16645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpf03019
]
ON006_16645
Enzymes [BR:
dpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ON006_16645
Messenger RNA biogenesis [BR:
dpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ON006_16645
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WAC15454
UniProt:
A0A9E8NET6
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All DBs
Position
4063238..4064566
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AA seq
442 aa
AA seq
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MTFEELNLTKPLLKALTEAGYTTPTTIQQKVFSVTMSGKDVCGIAQTGTGKTFAYLLPTL
RQLEFSKDRLPQLLILVPTRELVVQVVEEVRKLSAYLTLQVVGVYGGGNIKVQMAELKMG
ADVVVATPGRLVDLALNSSLKTKAIKKLVIDEVDEMLNLGFRTQLKNILDILPQKRQNLL
FSATITQEVEALMQTYFNNPVRIEAAPVGTPLDNIEQKAYEVPNFYTKVNLLDLLLEQNE
DMSKVLIFVATKKLADQLYVQLELGYLNKIGVIHSNKEQNHRFNTIRQFHDGTYRILIAT
DIIARGLDVAEVSHVFNFDIPEIPENYIHRIGRTGRADKKGVAISFITEREKEFLTLIEE
LMDYQIPITPLPETLKISEILTPDEEPKIFMKNIDVKLPKRESVGAAFHEKAAKNQKVNV
RRNHAQEKMQKYGRPIKRSGKK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgaagaattaaatctcaccaaaccgttgctaaaagcgctgactgaggcggga
tatacgacacctaccaccattcagcaaaaagtgttttctgttaccatgtccggtaaagat
gtgtgcggcattgcgcagacgggaaccgggaaaacatttgcttacctccttcccacgctt
cgccagctcgaattttcgaaggatcgcttaccccagcttctcattctcgtcccaacccgc
gaactcgtggtgcaggtggtggaagaagtccggaaactgagcgcatatctgacgttgcag
gtagttggcgtgtatggcggaggcaacatcaaagtgcagatggctgaactgaaaatgggt
gccgatgtggtcgtggcgacaccggggcgactggttgatctggcattgaatagttcgctg
aaaaccaaggcgatcaagaaactggtcattgacgaagtagacgaaatgctcaacctggga
ttcaggacccagctgaaaaatatactggacattcttccgcaaaaacgacaaaacctgctg
ttttcggcaactattacccaggaagtcgaagctctgatgcagacctatttcaacaatcct
gtcagaatcgaggcagcgcctgttggaacccctctggacaacattgaacagaaagcttac
gaggtcccgaatttttataccaaagtaaacctgctggatctgctgctggaacaaaatgag
gatatgagcaaggtcctgatttttgtggccaccaaaaaattggctgatcagctttacgtt
cagctcgaactaggatacctgaacaaaatcggtgtgatacattccaataaggagcaaaat
caccgttttaatacgatcaggcagtttcacgacgggacttatcgcattctcatcgccaca
gacattatcgcacgcgggctggatgtcgcggaagtatcgcatgttttcaactttgatatt
cccgaaatacctgaaaactacattcaccggatcgggagaacaggtcgggccgataaaaaa
ggggttgcgatttcattcattaccgagcgggaaaaggagtttctgacgctgatcgaagag
ttaatggattaccagattcccattacgccattgcccgaaacgcttaaaatctccgaaatt
ctcacaccggatgaagaaccgaaaattttcatgaagaacattgatgtgaaactcccaaaa
agggaatctgtcggtgctgcttttcatgagaaagctgcgaaaaatcagaaagtaaacgtg
cgacggaaccacgcacaggagaaaatgcagaagtacggcagacctatcaaacgatccggc
aagaaatag
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