Dictyostelium purpureum (cellular slime mold): DICPUDRAFT_97591
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Entry
DICPUDRAFT_97591 CDS
T02090
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dpp
Dictyostelium purpureum (cellular slime mold)
Pathway
dpp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DICPUDRAFT_97591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpp03400
]
DICPUDRAFT_97591
Enzymes [BR:
dpp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DICPUDRAFT_97591
DNA repair and recombination proteins [BR:
dpp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
DICPUDRAFT_97591
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
PTCB-BRCT
RNA_ligase
FTZ
Motif
Other DBs
NCBI-GeneID:
10500716
NCBI-ProteinID:
XP_003287084
JGI:
Dicpu1_97591
UniProt:
F0ZI28
LinkDB
All DBs
Position
Unknown
AA seq
1076 aa
AA seq
DB search
MDRLSLFLSEDEEENEETKNNTQNINDNSKNNLYNAFINNNYNNNNISDQQPIISTPQQQ
QLQQQQQQQKINSPIKNSKKDIDDNDIIKAFKDNKINVRNQNQNQINDYKYQKTVPFTTF
CNLLDKIINDTKISNKKKYLSIFFSKYKEEPNNYFQLLRLLLPHMDRDRNTYGIKEKTLA
RLYVELLNISVESQDATRLLNWRKSTNADEIGGDFGSAIYLSLKNRCLEKGILSMGDINE
ALDRLNQVDDNKSKALILKKVLRSSTAQEQKWFVRLILKEMKMGLNEKTALKFFHPSAMD
HLSITSNLRLVCSNLFYMSPEEQKKLKDEQKPVTSNATVLDIHNLKIETFNAIRPMLADR
KPIDYLFSILDNNPYHVPSSNGLGPSTTSYIIEKKYDGERTQIHKDGNDIRFYSRNTNDT
TFIYGSLLLPIVKECVLADKCILDGELIVWDTVTQRFEDFGKLKTLALNKDGISGSGDPL
GANYGKQLCYIAFDILFVKDKSVMPLPLAQRTMLLKRCINVKDKQFEISEQTPVSTVQEV
LGQLDAAIMNREEGLMLKDLNSFYVPAERKEKWIKIKPEYLDGMGDDFDLVIIGGYYGSG
INRRGGTISHFMLGVAYCPDDVVDEESLQEKVVFYSFCKVGSGYTDEQLKILQKELDPHW
SPFNTNKPPSCIQLAEPFKEKPDVWIDPRKFSKVVQIKAAQLNPTEKYKAGYTLRFPRVL
KIRDDKSWQDCSTFSDILELYKNFQNNDFKFKTLLNNNSIKTTTQKKRKLEINGISEAGS
GPGKLKVLSIFQDTDTSNIVPIQNIFQGLEFCVIKGNQQYTKSKLEIMIVELGGTKVQNP
SKNNTHYVIGSKEVVKIQNLISSGFFDIVLFQWVVDCYNEQKLIPLGPKYMIFTTESTKK
KFLLESDPFGDSYFNETNFSELKDCFNQVDKENCNHSNSTNINNNKQIIKGNKNQKLLNN
EQFSIDKSIIELKYFSKNCWWTLFKPNVFYLDRYQVIGEPSTLIENNNLELSSLYIEFYG
GTVSLQLNDTVTHVVIDQSDQSRIPFINNKINSIKKLNQIEIINPNWIKNLIDNIK
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggatagattatcactttttcttagcgaagatgaagaagaaaatgaagaaacaaaaaat
aatacacaaaatataaatgataatagtaaaaacaatctatataatgcttttataaataac
aattacaataataacaatatcagtgatcaacaaccaataatatctacacctcaacaacaa
caactgcaacaacaacaacaacagcaaaaaataaattcaccgattaagaattctaaaaaa
gatatagatgataatgatattattaaagcatttaaagataataaaattaatgttagaaat
caaaatcaaaatcaaatcaatgactataaatatcaaaaaacagtaccattcactacattt
tgtaatttattagacaagattatcaacgataccaaaattagtaataaaaagaaatatcta
tcaatatttttctcaaagtataaagaggaaccaaataattattttcaattgttaagatta
ctgttacctcatatggaccgtgatagaaatacttatggtattaaagaaaagactctagca
aggctttatgtagaacttttaaatatatctgtagagagtcaagatgcaacaagattatta
aactggaggaaatcgaccaatgctgatgaaattggtggtgattttggaagtgccatatac
ctatctttaaagaacagatgtctagaaaaaggaattttgtcaatgggtgatattaatgaa
gctcttgatagactaaatcaagttgacgacaataaatcaaaggcattaatattgaaaaaa
gtattacgttcaagtactgcacaggaacaaaagtggtttgttagattaattttaaaagaa
atgaaaatgggtttaaatgaaaagacagcactaaaattttttcatccatcagccatggac
catcttagtatcacttcaaatttaagactagtatgcagcaatttattttatatgtctcct
gaagaacaaaagaaattaaaggatgaacaaaaaccagtaacctcaaatgcaaccgtatta
gatattcataatttaaaaattgaaacattcaatgcaattagaccaatgctagctgataga
aagcctatagattatttgttttcgattttagacaataacccctatcatgttccatctagc
aacggtcttggcccgtccactacatcatatataatcgaaaaaaaatatgatggggaaaga
acccaaattcacaaagatggcaatgatattagattctattcaagaaatacaaatgataca
acgtttatctatgggtcactgttattaccgattgttaaagaatgtgttctagcagataag
tgtatactagatggtgaattaatcgtatgggatacagttacacaaagatttgaggatttt
ggtaaacttaaaacattagctttaaacaaagatggtatttcaggtagtggagacccattg
ggcgcaaattatggcaaacagctatgctatattgcttttgatattctctttgttaaagat
aaaagtgtcatgcccctgccattagcccaacgtacaatgcttttaaagagatgtattaat
gtaaaagataaacaattcgaaatcagtgaacaaactccagtatcaacagtacaagaagta
ttgggtcaattagatgcagcaattatgaatagagaggagggtttaatgcttaaagattta
aactcgttctatgtaccagcagaaagaaaagaaaaatggattaaaatcaaaccagagtat
ttagatggtatgggtgatgattttgatcttgttattattggtggctattatggaagtggt
ataaatagaagaggcggcacaatttctcatttcatgttgggtgtagcatactgtccagat
gatgtagtggacgaagagtctcttcaagaaaaagttgtattttattctttttgcaaagtt
ggctctggttatactgacgagcaactaaaaatacttcaaaaggagctggatccccattgg
agcccatttaatacaaataaaccaccatcctgtattcaattagcggaaccatttaaagaa
aaacccgacgtatggattgatccaagaaagttttcaaaggtagtccaaataaaagcggcc
caattaaatccaactgaaaaatataaagcaggctatactttaagattccctagagtttta
aaaatacgtgacgataaatcatggcaagattgttcaactttttcagatattttagaactt
tataaaaactttcaaaataatgactttaaatttaaaaccttattaaataataatagtatc
aaaacaacgactcaaaagaaaaggaaattagaaattaatggtattagtgaagcaggatct
ggtccaggaaaattaaaggtattatcaatatttcaagacaccgacacttcaaatattgtt
ccaatccaaaatatatttcaaggtctcgagttttgtgttataaagggtaaccaacaatat
acaaaatcgaaattagaaattatgatagtggaattgggtggtacaaaagttcaaaatcct
tcaaaaaacaatacacactatgtaataggatcaaaagaagtggttaaaattcaaaattta
atttcatctggtttctttgatatagtattatttcaatgggtcgtagattgctacaatgaa
cagaaattaataccattaggtccaaaatatatgatatttactacagaatccacaaaaaag
aaatttttattagaatctgatccttttggcgactcttattttaacgaaacaaattttagt
gaactaaaagattgttttaatcaagtcgataaagaaaattgcaatcatagtaatagtacc
aatatcaataataataaacaaataataaaaggtaataaaaatcaaaagttattaaataat
gaacaatttagcatagacaaatcaattattgaattaaaatatttttcaaaaaattgctgg
tggacgctgtttaaaccaaatgtattttatttagatagatatcaagttataggagaacct
tcaacccttattgaaaataataatttagaactatcaagcctatatattgagttttatggt
ggtacagtttcattgcaattaaatgatacagtgacccatgttgtcatagaccaatctgat
caatctagaatcccattcattaataacaaaattaactcaattaaaaaactaaaccaaatt
gaaattataaacccaaattggataaaaaatttaattgacaacataaaataa
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