Dermatophagoides pteronyssinus (European house dust mite): 113790095
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Entry
113790095 CDS
T05775
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dpte
Dermatophagoides pteronyssinus (European house dust mite)
Pathway
dpte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113790095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpte03019
]
113790095
03041 Spliceosome [BR:
dpte03041
]
113790095
03009 Ribosome biogenesis [BR:
dpte03009
]
113790095
03016 Transfer RNA biogenesis [BR:
dpte03016
]
113790095
Enzymes [BR:
dpte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113790095
Messenger RNA biogenesis [BR:
dpte03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113790095
Spliceosome [BR:
dpte03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113790095
Complex C
U4/U6.U5 tri-SnRNP related factors
113790095
Ribosome biogenesis [BR:
dpte03009
]
Eukaryotic type
Pre-60S particles
Helicases
113790095
Transfer RNA biogenesis [BR:
dpte03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113790095
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113790095
NCBI-ProteinID:
XP_027195513
UniProt:
A0A6P6XRT9
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MDLFDVFDLDPKSNTNNDNNKRKADDNEQNNGQNSNENGSKNDDNVVDNGLIDKLINDVK
RKKGNEDNNQITTSMVEELTRVPNDTDDEDNENLGEINETFTARVEIHELETQGSSCVHE
VIIPVDLEYVPLRDHSENPNYKPAKEYKFILDSFQKEAILCIENNQSVLVSAHTSAGKTV
VAEYAIASSFQNKQRVIYTTPIKALSNQKYREFQEEFEDVGLITGDVTINPNATCLIMTT
EILRLMLFRGSEIMREVGWVIFDEIHYMRDRERGVIWEETIILLPDTVHYVFLSATIPNA
RQFAEWIAHLHHQSCHVVYTDFRPTPLQHYIYPAGGDGLHLVLDEQNNFREDNFNQAMNV
LQNPSGQNSSSSSAKGGDQSCIKVIRTIMERNLAPVILFSFSRKECEIYALQISNLKLDF
NSAEEKSLVEEVFNNAIDVLSDDDKKLPQVQQILPLLKRGVGIHHSGLLPLIKETIEILF
GEGLIKALFATETFAMGLNMPARTVVFTSVRKFDGTNFRFITSGEYIQMSGRAGRRGIDE
RGIVILRVDEKVNPAVGKEMICGRPDPLNSAFHLTYNMVLNLLRVEEVNPEYMLEHSFFQ
FQQYLEYPKLHEKYKKLKEQKSNIKIDNEDCIAEYVKIKNQITDLTKEFLVFITTPRYIL
PFLNSGRLLKIVNNDNLDMDWGVLINYNKPTMDRKQRQQEPIYQIDVLLPVDKTIDPISE
TILPPSNMEKCEMKIISLRLSNITQISSARAFLPHDLRSFDSRQSVLKSIQEIKKRFSGN
IPLLDPLEDMKIKDNDFLNIVKRIESLEKKLLEFKKINQDMVRQYERKQDIEKKMKQTKE
LMKKTRSLLQMDELKCRKRVLRRLGYCTSADVIEIKGRVACEITSGDELLLTEMLFNGLF
NDLNVYQISALLSCMVFEEKMDVRPKLGEELSKPLKTMQELAKKIATVSKESKLEIDEKI
YIEKFRPNLMDVIYSWTKGKSFSEICKMTDAFEGSIIRCMRRLEELLRQMCQASKVIGNT
DLENKFSEAIKLIKRDIVFAASLYL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggatttatttgatgtttttgatttggatccaaaatccaacactaataatgataataat
aaacgaaaagctgatgataatgaacaaaataatggccaaaattcaaatgaaaatggatcg
aaaaatgatgataatgttgttgataatggtttgatcgataaattaatcaacgatgttaaa
cgtaaaaaaggtaatgaagataataatcagataactacttcaatggtcgaagaattgaca
cgagtaccaaatgatacggatgatgaagataatgaaaatttaggtgaaattaatgaaaca
tttacagcacgtgttgaaatacatgaattagaaacacaaggttcatcttgtgtacatgaa
gtaatcattccagttgatttggaatatgttccattacgtgatcatagtgaaaatcctaat
tataaaccagctaaagaatataaatttattctggattcatttcaaaaagaagcaatactt
tgtattgaaaataatcaaagtgttttagtttcggcacatacatcggctggtaagacagtt
gttgctgaatatgctattgcatcatcatttcagaataaacaacgtgttatctatacaaca
ccgatcaaagcattaagtaatcaaaaatatcgtgaatttcaagaagaatttgaagatgtt
ggtttgattactggtgatgtaacaattaatccgaatgcaacttgtttgattatgacaacc
gaaattctacgtttaatgttatttcgtggtagtgaaattatgcgtgaagttggttgggta
atattcgatgaaattcattatatgcgtgatcgtgaacgtggtgttatctgggaagaaact
ataattcttttacccgatacagtacattatgtttttctttcggcaaccataccgaatgct
cgtcaatttgccgaatggattgcacatttacatcatcaaagttgtcatgttgtttatacg
gattttcgtccaacaccattacaacattatatttatccagctggtggtgatggtttacat
ttagtattggatgaacagaataattttcgtgaagataattttaatcaagcaatgaatgta
ctacaaaatccatcgggacaaaattcatcatcatcatcggctaaaggtggtgatcaaagt
tgtataaaagttattcgtacaattatggaacgaaatctagcgccagtaattctattcagt
tttagtcgtaaagaatgtgaaatatatgcactacaaatcagtaatcttaaattggatttt
aattctgctgaagaaaaatcattagttgaagaagtatttaataatgctattgatgtttta
agtgatgatgataaaaaattaccacaagtacagcaaatattaccacttttaaaacgtggt
gttggcattcatcatagtggtctattaccattgattaaagaaactattgaaattttattt
ggtgaaggtcttatcaaggcattatttgcaacagaaacttttgctatgggtttaaatatg
ccagccagaacagtagtgtttacaagtgttcgaaaatttgatggaacaaattttcgtttc
ataacttcgggtgaatatattcagatgagtggccgagctggacgtcgtggtattgatgaa
cgtggtattgtcatactacgggttgatgaaaaagttaatccagctgttggtaaagaaatg
atttgtggccgtccagatccattgaattcagcatttcatttaacatataatatggttttg
aatttgttacgtgttgaagaagttaacccggaatatatgttggaacatagtttttttcaa
tttcaacaatatcttgaatatccaaaattacatgaaaaatacaaaaaactaaaagaacaa
aaaagtaatataaaaattgataatgaagattgtattgccgaatatgttaaaataaaaaat
cagattaccgatttgacaaaggaatttttagtattcatcactacaccacgttatatttta
ccatttttaaatagtggacgtctattgaaaattgttaacaatgataatctagatatggat
tggggtgtattgattaattataataaacctactatggatagaaaacaacgacaacaagaa
ccaatttatcaaattgatgtactactgccagtggataaaacaattgatccaataagtgaa
acaatattaccaccaagtaatatggaaaaatgtgaaatgaaaatcatttcattacgatta
tcgaatataacacaaataagttcagcacgtgcatttctaccacatgatcttcgtagtttt
gatagccgacaatcggtattaaaatcaatacaagaaattaaaaaacgttttagtggaaat
atccccctgttggatccattagaagatatgaaaattaaagataatgattttctaaatatt
gttaaacgtattgaatcattggagaaaaaattattagaatttaaaaaaattaatcaagat
atggttcgtcaatatgaacgtaaacaagatattgaaaagaaaatgaaacaaacaaaagaa
ttgatgaaaaaaaccagaagtctattgcaaatggatgaattgaaatgtcgtaaacgtgta
ttacgtcgtcttggttattgtacatcggctgatgttattgaaattaaaggacgtgttgca
tgtgaaataacaagtggcgatgaattattattgactgaaatgttattcaatggtctgttt
aatgatttaaatgtatatcaaatttcagcattattaagttgtatggtttttgaagaaaaa
atggatgtacgaccaaaattaggtgaagaattatcaaaaccattaaaaacaatgcaagaa
ttggcgaaaaaaattgctacagtttcaaaagaatctaaattagaaattgatgaaaaaatt
tatattgaaaaatttcgaccaaatctaatggatgttatttattcatggacaaaaggaaaa
tcattttcagaaatttgtaaaatgactgatgcatttgaaggttcaatcattcgttgtatg
agacgtttagaggaattacttcgacaaatgtgtcaagcatccaaagtaattggtaatact
gatttggagaataaattttccgaagcaattaaattaatcaaacgtgacattgtttttgca
gcaagtttatatctttaa
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