Deinococcus puniceus: SU48_10425
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Entry
SU48_10425 CDS
T04339
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dpu
Deinococcus puniceus
Pathway
dpu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SU48_10425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpu03400
]
SU48_10425
Enzymes [BR:
dpu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SU48_10425
DNA repair and recombination proteins [BR:
dpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SU48_10425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
UB2H
Motif
Other DBs
NCBI-ProteinID:
ANE44119
UniProt:
A0A172TAR9
LinkDB
All DBs
Position
complement(2280762..2283899)
Genome browser
AA seq
1045 aa
AA seq
DB search
MTVAAPNLAKLLPAAPVGNLVLLPQVARAALFSAHAGPAVLLTTPDRAALYGSAGVLGAP
VTVNPGLRDWDTRHQHVVLDVNTALDLFPARPEDHALSLRVGNTYPREELLARLERLGYE
RDEEPGYQLRGDTVELRLEPGAGVPADAEAVWIRAEFFGDELDTLRQLVPGEMTGDKIKE
FVLEPTADYLTDVKWDATRLELLPGRVFLDAPEFYASSLGPLTDVLWTRLREREVTSFGR
APLELTDFNLDLVVLPFYRARLSDLERDITEWRGAGYRVLILVRHDRTAAYLADKLLNTH
EIPWLSIPRVPEGGLGFLRAAGEGGFVIPEHRTVVLTEDLIYGFQGGSALRGKRLNGKPV
TDALGLHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNLEYRAGARLSVPIEQLPVLRR
HPGTTDDPPVLSSFDKKDWARAKERARKNAEEVAGKLLVQYAARQVTPGNSFPPQPEWDS
MVEANFKFELTADQKTSLKETMRDLEAANPADRLISGDVGFGKTEVALRAAHRVIGHGKQ
VAILVPTTLLAEQHTSTFVERFKSLPVRVEGLSRFTGDKQAKAILAELAQGKVDIIIGTH
RLLSADIQFKDLGLIIVDEEHRFGVSQKEKLRALRGMPDTKDGKLDIPEGTKAVDTLALS
ATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTILAPFDPVTVRDAILSEIERGGKVFYI
HDRIASIGARSLYLRNLIPEARIGVAHGRMNEEELEEIMMGFEQGAFDVLVSTTIVETGL
DIPEANTILIERSDRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQRRLWAIADLQ
DLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTEMLAEAVARLKGEKTKAPASV
SIDLPINARLSPEYFATPEGQPDDEARIAAYGRLSEARTLQAVSRVERDLRKKYGPPSPE
VQNFIDLSKLRMTALAKRALSIGETMTHIQITFAYKSLDYDAAGLRNYPHRTEVQTFPPS
VKLEKRGIKPDDYARTLIDLLGYFG
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
gtgacggttgccgctcctaatcttgccaaactcctgcccgctgccccggtgggcaatctc
gtgttgctgccgcaagtggcgcgggcggcgctgttttcggcccacgctggccccgccgtc
ctgctcaccactccagaccgggcggccctctacggttcggcgggcgtgctgggcgcaccc
gtaacggtcaatcccggtttgcgcgactgggacacccggcaccaacatgtagtgctggac
gtaaacacggcgctggacttgtttcccgcccgccccgaagaccatgccctcagcctgcgc
gtgggcaacacttatccgcgtgaagagttgctggcccgcctagaacgcctcggctacgaa
cgcgatgaagaacccggctaccagttgcgcggcgacacggtagaactgcgtctggaaccc
ggtgcaggcgtgcccgccgacgccgaagccgtctggattcgggccgaattctttggcgac
gagctggacaccttgcgccaactggttcccggcgagatgacgggtgacaagatcaaagag
tttgtgctggaacccaccgccgactacctgaccgatgtgaaatgggacgccacccggctg
gaactcttgccggggcgggtcttcttggacgccccggagttctatgcttcctcacttggc
cccctcaccgacgtgttgtggacgcgcctacgcgaacgggaagtgacttcgtttggccgt
gccccgttggaactgaccgatttcaaccttgatctggtggtgctgccgttttaccgtgcc
cgcctgagtgacctagagcgtgacattaccgagtggcgcggtgcgggttaccgagtcctg
attctggtgcgccatgaccgcacggcggcgtatctggccgacaaattgctgaatacgcat
gagattccgtggctcagcattccccgcgttcccgaaggcggcctcggcttcctgcgggcg
gcgggcgagggcggcttcgtcattcccgaacaccgcaccgtcgttctcaccgaagacctg
atctacggctttcagggcggcagtgcgctgcgcggcaagcggctgaacggcaaacccgtc
accgacgcgctaggcctgcatgtgggcgattacctgattcaccccgaacacggcatcggg
cagtttcaggggctggaaacgcgcacggtgctgggcgtcacccgcgattacctgaatctg
gagtaccgcgcaggcgcacgcctcagcgttccgatagagcaattgcccgtgctgcggcgg
catcccggtaccactgacgacccgcccgtgttgagcagtttcgacaaaaaggattgggcg
cgggccaaagagcgggcacgtaagaatgccgaggaagtggccggaaaactgctggtgcag
tacgcggcccgccaagtgactcccggcaacagctttccgccgcagcccgagtgggattcg
atggtggaggccaacttcaagtttgaactcaccgccgatcagaagacgtcgctgaaagag
acgatgcgcgatctggaggccgccaaccccgcagaccgcctgatctccggcgacgtgggt
ttcggcaaaaccgaggtggcgctgcgggccgcccaccgcgtcatcgggcacggcaaacag
gtggcgatcttggtgcccaccacgttgctggccgagcagcacacgtccacgttcgtagaa
cgcttcaagagcctgcccgtgcgggtggaaggcctgtcacgcttcacgggcgacaagcag
gccaaagcgattctggccgagttggcacagggcaaagtggacatcatcatcggcacgcac
cgcctgctcagcgccgatattcagttcaaagatttgggcctgatcatcgtggacgaggaa
caccgcttcggcgtgagtcagaaggaaaaactgcgtgccctgcgcgggatgcctgacacc
aaagacggcaagctggacattccggagggaacgaaggcggtagatacgctggcgctctcg
gccacgcccattccgcgcacgctgtacatgagcatggtgggtctgcgcgacatgagcagc
atccagaccccgcccaagggccgcaaacctatccagaccatcctcgcgcccttcgatccg
gtcaccgtgcgcgacgccatcctctcggaaatcgagcgcggcggcaaagtcttctacatc
catgaccgcatcgcctctatcggcgcacgcagcctgtatctgcggaacctgattcccgaa
gcgcgaattggcgtagcacacgggcgcatgaacgaagaggaattggaagaaatcatgatg
ggcttcgaacagggcgcgttcgatgtgttggtgtccaccaccatcgtcgaaaccgggctg
gacattccagaagccaacacgatcctgatcgagcgcagtgaccgcctcggcctcgcgcag
ctttatcagctccggggccgggtgggacgccgtgcccagactgcctacgcctacctgttc
tatccgccgcgcatgaccgaaaacgcgcaacgccgcttgtgggccattgccgacttgcaa
gacctcggatcggggcacctgctggccgaaaaagacatggaaattcgcggcgtgggcaac
attctgggcgaggagcagcacgggcatgtgcaggccgtgagcatcgacgtgtacaccgaa
atgctggccgaagcagtggcccgcctgaaaggggaaaagaccaaagcgcccgccagcgtg
tctatcgatttgcccatcaacgcccgcctgtcgcctgaatactttgccacgccggaaggg
cagcccgacgacgaagcccggattgccgcgtatggccgcctgagtgaagcccgcaccctg
caagccgtgagccgtgtagaacgcgatctgcgaaaaaaatacggcccacccagccccgaa
gtccagaatttcatcgatctctccaaactccgcatgactgccctcgccaaacgtgcactc
agcattggcgagaccatgacgcacattcagatcacctttgcttataagtcgctggattac
gacgcggcaggcctccgcaattacccacaccgtaccgaagttcaaacgttcccgcccagt
gtcaagctagagaagcgcgggattaagcccgacgactatgcccgcacgctcatcgatctt
ctgggctacttcggctga
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