Dryobates pubescens (Downy woodpecker): 104298334
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Entry
104298334 CDS
T08526
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104298334 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dpub03032
]
104298334 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104298334 (TOPBP1)
DNA replication proteins [BR:
dpub03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
104298334 (TOPBP1)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104298334 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
104298334
NCBI-ProteinID:
XP_009896695
LinkDB
All DBs
Position
Unknown
AA seq
1523 aa
AA seq
DB search
MKVSKEPFFVKFVKSSGNLEYFFKALESIKEFQPEEHLQILEEAAALNIKEDDKSLYICD
PFRGVVFSHLRKLGCRIVGPQVVLYCMESQRCVPRAEYPVYNMTMADVTVSCTSLEKDIR
EEVHNYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKMLWDKSQQ
RKSTLSCFLSFSMLRYTEVSMEDYTCPVFLGCTICVTGLSTSDRKEVQRLTAEHGGQYTG
QLKMNECTHLIVQEPKGRKYECAKKWNVHCVSVQWFSDSIEKGYCQDETMYRIEAGTKQS
NMPSTSTPTSHASKLDNHTLSDVSHISNISSSVVSDTACSSAMSSGLDPPPDELENLDIS
LFQAPEDLLDGCRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENSDELKH
FLDKTAHRPHVVTAKWLLQSFSKGYLHPVEQFIPLNYQLLENPILEQPGMKSVLPKNKSL
LRKEGVANTKHQKAAEDDFLSQYVNNDSILDEADKLTSGTFNDITHLTVQGENQSSVVDA
SLGESSVLAEGGLFVRKRFLLLGFDEEDESCIAETIKENAGKVLPPQSRTIADYAVVPLL
GCEVKPTVGDVVTHTWLATCVEQQLLLDPQSNPLFTPVPVAEGVTPLEGCVLSFSLFTGA
ERDSLVYLAGLLGARVQEFFVRKANVKKGMFASTHLVVRAPDGSKYEAAKKWKLPAVTAA
WLLHSARTGKRADESKFLVEDAAAEEKSFKTPATVKSPDSEQPTSLLEAGKQTAVTPLDI
NRFQSKAFQAVISHHIGKSTPLAQGGLPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALA
ALETPGGSDQKNRKLSTPLSEVICRNLKLALANSTRHTVALSASPQLSAAQPEAEEEPKP
LADVVIYVSKKLSKKQSQLNAIAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKER
GIHIVSEHWLLESAQEYKRLPESLFPHTYNPKMSLDISAVQDDRLSSSKLLSTGRPAEED
EIIPVDEDDAEGDVTTDQITERVTPGEGEVVTRESKGVLTQALEMRENFQRQLQEIMSAT
SLVKAQGQRGSLSRSSCDGSPSTPDSTRSVRNGRSRVLEALRQSCQTLTDMNTEPSQSEQ
IIWDDPTAREERARLVSNLQWPNSPSQYTEQGHSNVSKNVDESAFRGSLADAEMAAIAVP
EAGHEDLIEGLKTPKCRDPETPIKDHLIPTPQAPSIAFPLANPPVAPQPKEKVFPGDEQP
GEEPETHRKFQLSSLNPQERFDFCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLA
SMAAGKWVLHRSYLEACRRAGCFVQEEDYEWGSNSILNVLPGINVNQKKLALAAMRWRKR
INKGRQESGITEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHAESLFQEATHLFA
DFSKLKPDDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPTVESYRLPEAVSCLQHHTDP
AAGLSQKRKAQGETSGVKRCRVR
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttagcaaggagccgttttttgtgaaatttgtaaagtcttctgggaacttggag
tacttttttaaagctcttgagtctataaaagaatttcagccagaagaacacctccagatc
cttgaagaagcagcagcacttaatataaaagaagatgataaatcactttacatttgtgat
ccttttaggggtgttgttttcagtcatctcagaaagcttggttgcaggattgttggacca
caggtagtcctgtactgtatggagtcccagcgctgtgttccaagagcggagtaccctgtg
tacaacatgaccatggccgatgtaacagtgtcctgtaccagccttgaaaaagatattagg
gaagaagttcataactatgtgcagatgatgggtggacgtgtgtacagagacctcaatgtg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttagtagctgcttct
ctgaaaaaacctattttgcttccctcttgggttaagatgctgtgggataagtctcagcaa
aggaaaagcacgttgtcttgctttctttcctttagcatgctgagatacaccgaggttagc
atggaagactacacctgccctgtgttcttgggctgtaccatttgtgtaactggcttaagc
acctcggacaggaaagaagtccagcgccttactgctgagcatggagggcaatacacaggg
cagctcaagatgaatgagtgtactcacctcatagtccaggagccaaaaggtcggaagtat
gaatgtgccaaaaaatggaatgtgcactgtgtgtctgtgcagtggttttctgacagcatc
gagaaaggctactgccaggacgagacaatgtatagaatagaggctggaacaaagcagagt
aacatgcccagtacatcaacacctacaagccatgccagcaagcttgacaatcataccctt
tcagatgtcagccacatttccaatatcagttccagtgttgttagtgacactgcatgtagt
tctgctatgagcagcggactggatcctcctcctgatgaactggaaaacttggatataagt
ttgtttcaagcccccgaagatctgctagatgggtgtcgaatctatctgtgtggcttcagt
ggcagaaagctggacaagatgagaaggcttatcaattgtggtggaggtgttcgatttaat
cagcttaatgaagatgttacccatgtcattttaggggagaatagtgatgagctgaaacac
tttttggacaagacagcccacaggcctcatgtagtgacagcaaaatggttgctgcagtca
tttagtaaaggttacctacatccagtggagcaatttatccctctaaactaccagctgttg
gagaatcccattttggagcaacctggaatgaaatcagttcttccaaaaaataagagtctc
ttaaggaaagagggtgtggccaatacaaagcaccagaaagctgctgaagatgacttcctc
tctcaatatgtaaacaatgactctatattagatgaagctgataaactaacatctggaacc
ttcaatgatattactcacttgactgttcaaggagagaatcagtcttctgttgttgatgct
tctttgggagagtcttcagtgctggctgaaggaggcttgtttgtcagaaagaggtttctg
ctgctgggttttgatgaagaggatgagtcctgcattgcagagaccataaaggagaatgct
gggaaagttctgccaccacaaagcagaaccattgcagactatgctgtggtacctctactg
gggtgcgaggtgaagccaactgttggtgatgttgtcacacatacgtggctggcaacatgt
gtggaacagcagctccttttggatccccagtccaatccacttttcacaccagtcccagta
gcagaaggagttacccctctggaaggttgtgttctctctttcagcctgtttactggtgca
gagagagattccctggtttatctggcaggactgctaggagctagagtccaggagttcttt
gtgcggaaagccaacgtgaagaagggaatgtttgccagtacccatctcgtggtgagggcc
ccggatggttccaagtatgaagctgccaagaagtggaagctgccggcagtcactgcagcc
tggcttctgcactctgcaaggactggaaagagagcagatgaaagcaagttcttggtcgaa
gatgcagcggctgaagaaaagagtttcaagacaccagcaactgttaaatctcctgattca
gaacagcctacatctctcctcgaagccggaaaacaaacagctgtgacccctcttgatatt
aacaggttccagagtaaagctttccaagctgtaatctctcatcatattgggaagtcaacc
cctcttgcacaagggggactgccacagaaagaaccgtctttacatcttgatacaccatca
aaatttctttccaaagacaagttattcaagccttcttttgatgtaaaggatgctctggca
gctttggaaactccaggaggttctgatcaaaaaaacaggaagctgagcacacctctttct
gaagtcatctgcagaaacttgaaactggcactggcaaacagcacaaggcatacagtagct
cttagtgccagccctcagctgagcgctgcacagccagaagcggaagaagagcccaagcct
ctagctgatgttgttatatatgttagtaaaaaactgagcaagaagcaaagtcagctgaat
gccatagcagcttctcttggggcagactacagatggtgctttgatgaaacagtaacacac
ttcatctacaagggaggacagaatgacaacaataaggagtacaagtctgttaaagagcgg
ggaatccatattgtttctgagcactggctgttagagagtgcccaggaatataaacggctt
cctgaatctctctttcctcacacgtacaatcctaaaatgagcctggacatcagtgcagtg
caagatgacaggctctcctccagtaaactgctgtcaactggaagaccagcagaggaagat
gagattattccagtggatgaagatgatgctgaaggagacgtaactactgaccaaataaca
gaaagggtgactccaggggaaggagaggtggtaacaagagaatccaaaggagttttaact
caggcactagaaatgagggagaacttccagaggcagctgcaggagatcatgtctgccaca
tcactagtgaaagcacagggacagaggggatccctttccagaagcagctgtgacggctct
ccaagcacacctgacagcacgcgctctgtgcgcaacggccgcagcagggtcttggaagct
ctcagacaatcctgtcagaccctcacagatatgaacacagagccatcccagagtgagcag
attatctgggatgatcctactgcaagggaggagagagcaaggcttgtcagcaacttgcag
tggcctaacagtccttcccagtacactgagcaaggccacagtaatgtcagcaagaacgtg
gacgagtctgccttcagaggatctttagctgatgcggagatggctgctatagctgttcct
gaggctgggcatgaagatttgattgaaggtctgaagactcctaaatgtagagatcctgaa
acaccgattaaagatcacttgatccccactccgcaggcccccagcattgctttcccactg
gctaaccctcctgtggcaccacagcccaaagaaaaggtttttccaggggatgagcagcct
ggggaagaaccagaaacacaccgcaaatttcagctgtcttctcttaatcctcaagaaagg
tttgatttctgccatctgattgaggaattaggtggaatagtactggagaagcagtgcttt
gatcccagctgcacacacattgttgtggggcatccccttcggaatgaaaagttcctggca
tcgatggcagctgggaagtgggtccttcatcgctcctacctggaggcatgcagaagagct
ggctgctttgttcaggaagaagattatgagtggggaagtaattccatacttaatgttctg
cctggaatcaatgtaaaccagaaaaaactagcacttgcagccatgaggtggagaaaaaga
attaataaagggagacaagaaagtggcattactgagggagctttcagtggttggaaagtg
atcctgaatgttgatcaaaccaaggaagcaggcttcaggcgccttcttcagtcaggagga
gcaaaggtgttttctggtcacgctgagtccctcttccaagaagcgactcatctctttgct
gatttcagcaagctgaagccagatgacagcagggtgaacgtggcagaggcagcagcccag
ggagtgaactgcctgaaaccagagtacatcgctgactacctcatccaggatccacctccc
acagtggagtcttaccgcttgccagaggctgtctcttgccttcagcatcacacagaccct
gcagctggattatcccagaagagaaaggcacagggagaaacaagtggagtcaagagatgc
agagtacgctga
DBGET
integrated database retrieval system
