Dryobates pubescens (Downy woodpecker): 104298614
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Entry
104298614 CDS
T08526
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104298614 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104298614 (LIG4)
Enzymes [BR:
dpub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104298614 (LIG4)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104298614 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
SKA1
DUF2120
Motif
Other DBs
NCBI-GeneID:
104298614
NCBI-ProteinID:
XP_009897006
UniProt:
A0A093GGB4
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MASTPTSESSKKTVASHVPFADLCCTLERIQKCKSRPEKTKCFKDFLDSWRKFHKALHQK
EKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTPA
GSRGDAGDFATIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLIS
QSTALEQKWLIRMIVKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPSVSLS
DVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNGF
DYTQQFGASPLDGSLTPFIHKVFKSNIQNCILDGEMMAYNPDTGTFMQKGNKFDIKRMVE
DSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILTSVFTPVTGRMHIVHKRSARTRKDVID
ALNEAIDNREEGIMVKDPLSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKNPPC
NILCGTEKPEMYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMTL
DMLQDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSGISKVS
NVFEDVEFCVMTGTAKYSKSDLESRIAEFGGSVVQNPGPETYCIIAGAENVRVKNIIASN
KYDVVRSEWLLQCFQSKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADADVVQLKE
VFSRMKDNKVMPLDVIAELEERYSWNNYQLNIFRGNTIYVDCYAVVNEPRTKIHGTTLSI
RALELRFYGAKVVSHLEEGVSHVVIGEDCSRVKDIKALRRTFGKKFKIVSELWVTQSVEE
GVPKNENQYLM
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacacctacttccgagtcttctaaaaaaacagtggcctctcatgtgcctttt
gcagacctgtgttgtactctggagcgaatacagaaatgtaaatctcgtccagagaaaaca
aagtgtttcaaggattttctggattcctggagaaagttccataaagctcttcatcagaaa
gaaaaagatgtgacagattctttttatcctgctatgcgacttattcttccacagctggaa
agagaaaggatggcatacgggattaaagaaactatgcttgcaaagctatatattgaactg
ctcaatttaccaaaggatggaaaagatgctgcaaagcttttgaattacagaacacctgct
ggctcacgtggagatgctggagattttgcaacaattgcatactttgtgttgaaacctaga
agcccaaaacaaggcagactgacaatagagcaagtcaatgagcacttagatgctatagct
aataataatgctgctaaaaacaaaggtctgttaaaaaaaagtcttctccagttaattagc
cagagcacagcactggaacaaaaatggctcatccggatgattgtaaaagatctaaagctc
ggtgttagtcaacaaactatattttccatttttcatcctgatgctgttgaattgcacaat
gtcacaactgatttggaaaaggtttgcagacaactgcatgatccctctgtctcacttagt
gatgtttctatcatgttgttttcagccttcaaaccaatgcttgctgctattgctgatgtc
cagcaaatcgagaaacaaatgaataaccaagtattctacatagaaactaagctggatggt
gaacgtatgcagatgcacaaagatggagatgtgtataagtacttttcccgaaacgggttt
gactatactcagcagtttggggcttccccacttgatggttcgttaacaccatttattcat
aaagtatttaaaagcaatatacaaaattgcattcttgatggtgaaatgatggcgtacaat
cctgacacgggaacctttatgcagaaaggaaacaaatttgacataaaaagaatggtggag
gactctgatctgcagacctgtttctgtgtatttgatgtattgatggttaatgatcagaag
ttgggccacgaagtactaagcaaaagatatgaaatcttaactagtgtatttaccccggta
acaggcaggatgcacattgtacataaaagaagtgccagaacaagaaaagatgtaattgat
gctttaaatgaagcaatagataatagggaggaaggcattatggtgaaagatcccctgtcc
acctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtcaat
gggctgatggatgagcttgaccttttaattgttggtggttactgggggaagggctcacgt
ggtggtatgatgtctcattttttgtgcgctattgcagagacaccccctccaaatgaaaaa
cctaccgttttccattctatttgtcgtgttggctctggctatactatgaaggagttgtat
gacctgggtttgaaactggctaaacactggaagccctatcataggaagaatcctccctgt
aacattttatgtggaactgagaaacctgaaatgtacattgaaccttgcaactctgtcata
gttcaggtcaaagcagccgagattgttaacagtgacatgtacaaaactgactgcactttg
agattcccccgaattgagaagataagagaggacaaagaatggtatgagtgcatgacttta
gacatgttacaggatctcagaagcaaagcagaagggaagctggcgtctaagcaccttcat
atagatgagtatgatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgaagaag
ataattggaatagccgaacaatttaaagctcctgatctttctggtataagcaaggtttca
aatgtatttgaagatgttgagttttgtgttatgactggaacagcaaaatactcaaaatct
gatctggaaagcagaatagctgaatttggtggcagtgtggtacagaacccagggcctgag
acttactgtatcatcgcaggagctgagaatgtcagagtgaagaatatcattgcttccaac
aaatatgatgtggtgaggtcagagtggcttctacagtgttttcagtccaaaatgctggtg
ccttggcagccggcctttatgattcacatgtctcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagctacacagcagacgcagatgttgtgcaactcaaggaa
gtgttctcgagaatgaaagacaataaggtgatgcctttggacgtgattgcagagttagaa
gaacgctattcatggaacaactatcagctcaatatattcagaggaaacactatttatgtg
gactgttatgctgttgttaatgagcccagaaccaaaatccatggaacaacgctatcaatt
agagctttggagctccgtttttatggtgcaaaagtagtctctcaccttgaagagggtgtc
tcccatgttgttataggagaagattgttcccgagtaaaagacataaaagcactgaggaga
acatttgggaagaaatttaaaattgtatctgaactgtgggtaacacagtcagtggaggaa
ggagtccccaaaaatgaaaatcaatatttaatgtaa
DBGET
integrated database retrieval system
