Dryobates pubescens (Downy woodpecker): 104307271
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Entry
104307271 CDS
T08526
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub04140
Autophagy - animal
dpub04148
Efferocytosis
dpub05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104307271 (VPS11)
04148 Efferocytosis
104307271 (VPS11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104307271 (VPS11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dpub04131
]
104307271 (VPS11)
Membrane trafficking [BR:
dpub04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104307271 (VPS11)
Hops complex
104307271 (VPS11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3H2C3
zf-RING_5
zf-RING_UBOX
Paralemmin
DLP_helical
zf-ANAPC11
zf-RING_11
TPR_11
zf-C3HC4_3
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
104307271
NCBI-ProteinID:
XP_009906617
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MAAYLQWRRFVFFDRETVKEPPGPDGAGGKCFALPAGITVCDSGRGSLVFGDMEGQIWFL
PRSLQLSSFQAYKLRVTHLYQLKQHNILVSVGEDEEGINPLVKVWNLEKRDGGNPLCTRI
FPAIPGNKPTVVSCLTVHENLNFMAIGFADGSVVLTKGDITRDRHSKTQILHEGSYPVTG
LAFRQSGKTTHLFVVTTENIQSYMLSVKDYPHLELDTHGCGLRCSSLSDPSQDLQFIVAG
NECVYLYQPDERGPCFAFEGQKLIVHWYRGYLIIVSKDRKTSPKSEFAGNEAQNSDKQVL
NIYDLCNKFIAYSSVFDDIVDVLAEWGSLYVLTRDGKIHVLQEKDTQTKLEMLFRKNLFE
MAINLAKSHHLDSDGLSEIFRQYGDHLYAKGNHDGAIQQYIRTIGKLEPSYVIRKFLDAQ
RIHNLTAYLQTLHLQSLANADHTTLLLNCYTKLKDSSKLEEFIKTSESEVRFDVETAIKV
LRQAGYYSHAVYLAEKHAHHEWYLKIQLEDIKNYQEALHYIGKLPFDQAESNMKRYGKIL
MNHVPKETTELLKILCTDYQPSGDNEGPGLLEGKKANSEEFIPVFANNSRELKAFLEHMT
EVQADSPQGVYDTLLELRLQNWAHERDEQIKEKLHSEALTLLKSGRFKTVFDKALVLCQM
HNFKDGVLYLYEQGKLFQQIMHYHMQNEQYKKVIEVCELYGDQEACLWEQALGYFARKEE
DCKEYIAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIKDYLVNKLQKQSRQVEQDEQR
IQKYREETTRIRQEIEELKASPKIFQKTKCSICTSALELPSVHFLCGHSFHQHCFESYSE
SDSECPTCMPENRKVMDMIRAQEQKRDLHDQFQHQLKCANDGFSVVADYFGRGVFNKITL
ITDLPPGKGATTIEAGLQRELLLHAKRST
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtacctgcagtggcgccgcttcgtcttttttgacagagagacggtgaaggag
ccgccaggtcccgatggggctggtgggaagtgcttcgcgctgcccgcgggcatcacggtc
tgcgactcgggccgtggaagcctcgtgttcggggatatggaaggtcagatttggtttttg
cctcgctcccttcaactgagtagtttccaagcttacaagctaagggtaacgcatctgtac
cagctgaagcagcacaacatcctggtttctgttggcgaggatgaagaaggtattaaccct
ttggttaaagtttggaacctggagaaacgagatggtggcaatcctctctgtacacgaatt
tttccagcaataccagggaacaagcccacagttgtatcttgcctgactgtccatgaaaat
cttaatttcatggctattggttttgcagatggcagtgttgtgctcacgaagggagacatc
actcgagaccggcacagtaagacccagatcctacacgaaggcagttacccagtcactggc
cttgcctttcgacagtctggcaaaacaacacatttatttgtggtgaccacagagaacatc
cagtcttatatgctttcagtgaaagactatcctcacctggagctggacactcatggctgt
ggactgcgctgttcgtctcttagtgacccctcccaggatctccagttcatcgtggcagga
aatgaatgtgtgtacctttatcaaccagatgaacgtgggccctgctttgccttcgaggga
cagaagctgattgttcactggtatcgagggtacctcatcattgtctcgaaggaccgaaag
acttctccgaagtcagagtttgctgggaatgaggcgcagaattcggacaagcaagtcctg
aatatctatgacttgtgcaacaaattcattgcatacagctcagtttttgatgatattgtg
gatgtcttagcagagtggggttctctgtatgtactgaccagagatgggaagattcatgtg
ctgcaggagaaggatacgcaaaccaaactcgagatgctgttcagaaagaacttatttgaa
atggccattaacctggctaagagtcaccacttggacagcgatggcctgtcggagatcttc
cggcagtacggcgatcacttgtacgccaaggggaatcacgatggagccatccagcagtac
atccggactatagggaagctggaaccttcttatgttattcggaaattcctggatgctcag
cgcatccacaaccttactgcttaccttcagactctccacctgcagtcactggccaatgct
gaccatactacgcttctgctgaattgctataccaaactcaaagacagctccaaactggag
gagttcattaagacgagtgagagtgaggtccgctttgatgtggaaacggcaatcaaggtg
cttcgtcaagcaggctactactcccacgctgtgtacctggcagagaagcacgcccatcac
gagtggtacctcaaaatccagctagaggacatcaagaactaccaagaggctttgcactac
attggaaaactgcctttcgatcaggcagagagcaacatgaagcggtatggtaaaatcctg
atgaaccatgtccctaaagagaccacagagctgctgaagatcctttgcactgattaccag
ccttcgggagacaatgaaggtcctgggctgctggaaggaaaaaaggctaattcagaagag
ttcattccagtctttgcaaacaactcccgagaactgaaggcttttctggagcacatgact
gaggtgcaggctgactctccacagggtgtctatgacactttgctggaacttcggctccag
aactgggcacatgaacgagatgaacagatcaaggagaagctgcacagtgaagccctgacc
cttctaaagagtggaaggttcaaaacagtctttgacaaggccttggttttatgtcagatg
cacaatttcaaggatggtgtgctttacctttatgagcagggcaaacttttccaacagatc
atgcactatcacatgcagaacgagcagtacaagaaagtaattgaggtgtgtgagttgtat
ggagaccaggaggcttgtctgtgggaacaggctctcggctactttgcacggaaggaggag
gactgcaaggagtatattgctgcagtactgaagcacattgagaacaagaatctcatgcct
ccactgcttgttgtgcagacactggctcataactccacagccactctgtctgtgattaag
gattatcttgtcaacaagctgcagaagcagagccgccaggtagagcaggatgagcagaga
attcaaaaataccgagaagaaactacaaggatccgccaggagatcgaagaactaaaagca
agtcccaagatctttcagaagaccaagtgtagcatttgcaccagtgccctggagctgcct
tcagtccacttcctgtgcggtcactccttccaccaacattgttttgaaagctactcagag
agcgattcagaatgtccaacatgcatgcctgaaaatcgcaaagtgatggacatgatccga
gcccaggagcagaagagggatctgcatgaccagtttcagcatcagctcaagtgtgcaaat
gatggcttctccgtggtcgcagactacttcggtcgaggtgtcttcaataagatcaccctc
atcacggacttgcccccgggaaagggggctaccacaatcgaggccggcttgcagcgagag
cttcttctccatgccaaacgcagcacctga
DBGET
integrated database retrieval system
