Daphnia pulex (common water flea): DAPPUDRAFT_226474
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Entry
DAPPUDRAFT_226474 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03013
Nucleocytoplasmic transport
dpx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DAPPUDRAFT_226474
09122 Translation
03013 Nucleocytoplasmic transport
DAPPUDRAFT_226474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_226474
03041 Spliceosome [BR:
dpx03041
]
DAPPUDRAFT_226474
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
DAPPUDRAFT_226474
Spliceosome [BR:
dpx03041
]
Complex C
Other components
EJC/TREX
DAPPUDRAFT_226474
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DAPPUDRAFT_226474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-ProteinID:
EFX75086
JGI:
Dappu1_226474
UniProt:
E9GZL5
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MEIFDFEKTRCSFLDSISEALKLGGPPTISELLSVNNTAHLGEADKKAVWDQAFKDRFLS
DSSNFSIPLFEKLLQLSLDCAVALVCSPTLPVILLTDAFDILSLEKCEEIFYMVEMKVAI
WKQELFFNQCKNTLLRLCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNVVSEFN
LDNLTTFGAKDESYAADISANSEKHKDAMEVEESLSSDYNLYKKFWSLQDFFRNPNQCYT
KIPWKTFCLHTSDVLSAFSTIKLDERRNRSKWDEADVALNIDMNETSMNGGNVQQYFAKY
LTSQNLLELQLGDSNFRRYILLQFLIMFQYLDSPVNETHKLNEEQTTWVSEAIVQVYRLL
KDTPPDGASFVQSIRHILKREELWSNWKNDGCPEFRPSIISSTTDNDTIKDGTNGEKKTI
VVGRPRRLKRSLGDQIREASKRNKCIIGNAEMNRLWNLCPDNMAACRSKDRDFLPTLENY
FEEAIEQLDPSVESQYKRVSEANFGWRALRLLARRSLHFFTHGNTPITRLPDYLETHVRK
LAKDMQSANALPNVKPEPVDDAGEVEQMEPEADPVSNNSEIEGVPEETNVKPDEMEEEES
TEKKPVLCCTMDQLTRLAKQIGTNWKLLAPKLGFGPDEVEYFESETNEVEIQAKKMFQIW
LENEADATPENLLYTLEGLGMLDSAQGIL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaaatattcgattttgagaaaactcggtgttcgtttctggattccatttctgaagct
cttaaactgggtggtccacccactatcagtgaattactttcagttaacaatacagctcat
cttggggaagctgataaaaaagctgtatgggatcaggcttttaaagacagatttttgagt
gattcctcaaacttttccataccattgtttgaaaagttgttgcagttgagcctggattgt
gcagtagctctagtgtgttctccaacactgcctgtgattttgctcacagatgcttttgac
atcctgtctctggaaaaatgtgaggaaattttctacatggttgaaatgaaagtagcgatt
tggaaacaagagcttttcttcaatcagtgtaaaaataccttacttcgcctttgcaatgat
ctgctgaggcgcttgtcccgaagccagaacacggttttctgtggtcgaattcttctattt
cttgcaaaatttttcccattctctgaacgatccggacttaacgtagtaagcgaatttaat
ttggataatttgacgacatttggagctaaagatgaaagctacgctgctgatatatctgct
aattctgaaaagcacaaggatgcaatggaagtagaagaaagtttgagctccgactacaat
ctgtacaaaaaattttggtctctacaagatttctttcgaaaccctaatcagtgctatacg
aaaatcccgtggaaaacgttttgtttgcatactagtgatgttttgtctgcattttctact
atcaaactggatgagcggagaaaccgctctaaatgggatgaggcagatgtggcattaaac
atcgatatgaatgaaaccagcatgaatggtggaaatgtccaacaatatttcgccaaatat
ttgacgagtcaaaatcttctcgaacttcagctcggtgactccaacttcagacgttacatt
ctgctgcagtttctgattatgttccaatatctggattcacctgtcaacgaaactcacaag
ctcaacgaagaacaaactacgtgggtttccgaggctatcgttcaagtctatcggttattg
aaagatacacctccagatggcgcttctttcgtccaatctattcgacacatactaaagcgg
gaagaattatggagcaactggaagaacgatggctgcccggaattccggcccagcataatc
agctcaaccactgataatgatactataaaagatggtaccaatggagaaaaaaagacgatc
gtagttggccgaccaagacggctcaaaagaagtcttggagatcagattcgagaggcttca
aaaagaaataagtgcattattggaaacgctgagatgaatcgtttgtggaatctatgtcct
gataacatggctgcctgtcgatccaaagatcgagattttctacctacattagaaaactat
tttgaggaagccattgagcaactggatccttcagtggaaagccagtacaagcgagttagt
gaggctaattttgggtggcgtgctttgcggcttttggctagacgaagtttacatttcttc
actcatggtaatactcctatcactcggctgccagattacttggaaacgcacgttcgcaaa
ctggccaaggacatgcagtcagcaaatgcattgcctaatgtaaaaccggagccagtggac
gacgctggtgaggtagaacaaatggaaccggaagcagacccagtgtccaataactcggaa
attgaaggagtcccagaagaaactaatgtaaaaccggatgaaatggaagaagaagaaagc
actgaaaagaaacctgtactttgctgcacaatggatcaactcactcgcttagcaaaacaa
atcgggactaattggaaacttctcgcaccaaaacttggctttggaccagatgaggtggag
tattttgaaagtgaaacaaacgaagtcgaaattcaggctaagaaaatgtttcagatatgg
ttagaaaatgaagcagatgctactccagagaacctgctctacacattagaaggcctcggc
atgttagacagcgctcagggaatattatga
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