Diaphorobacter nitroreducens: BA022_05730
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Entry
BA022_05730 CDS
T04937
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dpy
Diaphorobacter nitroreducens
Pathway
dpy03030
DNA replication
dpy03410
Base excision repair
dpy03420
Nucleotide excision repair
dpy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BA022_05730 (ligA)
03410 Base excision repair
BA022_05730 (ligA)
03420 Nucleotide excision repair
BA022_05730 (ligA)
03430 Mismatch repair
BA022_05730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dpy03032
]
BA022_05730 (ligA)
03400 DNA repair and recombination proteins [BR:
dpy03400
]
BA022_05730 (ligA)
Enzymes [BR:
dpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BA022_05730 (ligA)
DNA replication proteins [BR:
dpy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BA022_05730 (ligA)
DNA repair and recombination proteins [BR:
dpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BA022_05730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BA022_05730 (ligA)
MMR (mismatch excision repair)
DNA ligase
BA022_05730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BA022_05730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
ASI68121
UniProt:
A0A2Z2LFD7
LinkDB
All DBs
Position
complement(1267128..1269323)
Genome browser
AA seq
731 aa
AA seq
DB search
MTEQSDLFPASGPKGSALVATKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQAL
EGAYPDLVTPDSPTQRVLGAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELK
LPPDAPPVEYVAEPKFDGLAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLP
AGVPPVLEVRGEVYMRRADFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLS
FFAYGLGEVTPAAEGGPDFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIVFHQRVGAER
DALPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKL
TPVARLAPVFVGGVTVTNATLHNLFELRRKKVRVGDQVIVRRAGDVIPEVVGVVPAGAGL
AVLAGSDALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGEVNHRC
SGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVDGHVIRTLPDLYRLGLSSLAQLD
RMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGRLDAIMDAGVEQL
LQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDEGEPAAAATLPLAGMTVVLTGT
LPTLGRDAAKDLLESAGAKVAGLVSKKTHYVVAGADAGSKLAKAQELGIPVLDEDGLHAL
LRGTTPNAGGG
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaatccgacctttttccggcttctgggcccaaggggtctgcgctggtagct
acaaaaatcaaagcgctgcgcgagcaactgaaccgctgggcgcacgagtactacgtccag
gacacgccgagcgtgcccgatgccgagtatgaccgcgcgttccagcagttgcaggcgctg
gagggcgcttaccccgacctggtgacgcccgactcgcccacgcagcgcgtgctgggcgcg
gtgctggacgggctgacaccggtgcgccaccgcgtgcccatgctcagcatccgcaccgaa
accgacaccgaggccagcggcgcccaagccttcgacgcgcgcgtgcgccgtgaactgaag
ctgccgcccgatgcgccgccggtggaatacgtggccgaacccaagttcgacggcctggcg
atgagcctgcgctacgagggcgggcgcctggtgcaggccgccacgcgcggtgacggcgag
gtgggcgaggacgtgacccacaacgtgcgcaccatccgccagatccccctgagcctgccc
gccggcgtgccgccggtgctggaggtgcgcggggaggtctacatgcgccgcgcggacttc
gacgcactcaacgagcgccagcgcgagaagggcgacaagaccttcgtcaacccgcgcaac
gccgccgccggcgcggtgcgccagttggactcaggcatcaccgcgcagcggccgctgtcc
ttcttcgcctacggcctgggcgaggtcacgccggccgccgagggcgggcccgacttcggc
acgcacttcggcatgctgcagcagctcaaggaatggggctttccggttgcagcccaggtg
cagattgcgcaaggcgcttctgaactcatagtgttccatcagcgtgtgggggccgaacgg
gacgcgctgccctacgacatcgacggcgtggtctacaaggtcaacagcctggcactgcag
cgccagctgggctttgtgacgcgcgagccgcgctgggccgtggctcacaaatacccggcc
caggagatggtcacgcgcgtggaaggcatcgacgtgcaggtgggccgcacgggcaagctg
acgcccgtggcgcgactcgcgccggtgttcgtgggcggcgtcacggtgaccaatgccacg
ctgcacaacctgttcgagctgcgccgcaagaaagtgcgcgtgggcgaccaggtgatcgtg
cgccgcgcgggcgacgtgattcccgaggtggtgggcgtggtgccggcgggcgcaggcctg
gcagtgctggcgggctccgacgcgctggtggacgccgccagcagcgcggacggcaccgca
cccgcgcagccgctggcggggccgcgccaaccctacgtgcctaacttccgcatgccgcgc
cagtgccccatctgcggcagcgccgtggtgcgcgagccgggcgaggtcaaccaccgctgc
tccggcgggctgttctgccccgcgcagcgcaaacaggcggtgctgcacttcgcacagcgc
cgcgccatggacatcgagggcctgggcgagaagctggtggaccagctcgtggatggccac
gtgatccgcacgctgcccgacctgtaccggctcgggctgtccagccttgcgcagctcgac
cgcatggccgagaagtccgcgcagaacgtgctggatgcgctcgacaaatccaagcgcacc
acgctggcgcgctttctcttcggcctaggcatccgccatgtgggcgaggccacggccaag
gacttggcacgccatttcggccggctcgacgccatcatggatgcgggcgtcgagcagttg
ctgcaggtgaacgacgtggggcccgtggtggccgaggccatccataccttcttcgcgcaa
ccgcacaaccgcgaggtggtggagcagctgcgggcctgcggcgtcacctgggacgagggc
gagcccgctgccgccgccacgctgcccctggcgggcatgaccgtggtgctgaccggcacg
ctgcccaccctgggccgcgacgcggccaaggacctgctggagtccgccggtgccaaggtg
gcgggcttggtcagcaagaagacgcactacgtggtggccggcgccgacgcgggcagcaag
ctcgccaaggcgcaggaactgggcatccccgtgctggacgaggatgggttgcatgcgttg
ctgcggggcacaacgcccaacgcaggtgggggctag
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