Diaphorobacter nitroreducens: BA022_07305
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Entry
BA022_07305 CDS
T04937
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dpy
Diaphorobacter nitroreducens
Pathway
dpy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BA022_07305 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpy03400
]
BA022_07305 (ligD)
Enzymes [BR:
dpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BA022_07305 (ligD)
DNA repair and recombination proteins [BR:
dpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BA022_07305 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASI68387
UniProt:
A0A2Z2LLF8
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All DBs
Position
complement(1608217..1610730)
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AA seq
837 aa
AA seq
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MPRKDPLAVYKQKRNFAVTPEPADGGAQSQALQYVIQKHWASRLHYDLRLELDGTMKSWA
VPKGPSYDPADKRMAVQVEDHPISYNQFEGQIPPRQYGAGRVIIWDRGYWVPQGNPREDY
RKGKLKFEIHGHKLHGHWTLVRMHGRDDDKQPPWLLIKERDGLERAAEEFNVVDEMPDSV
ADQPPVAPPARAFAQRAGPAQMQPTAAAVTWTSAPTAPLPDQLSPQLATLVDGPPADLTQ
WLWELKFDGYRMLARVQRGKARLYTRNGNDWTARMPALAQALAALPLSSAWIDGEVLVLD
AQGVPDFQALQNAFDGRSTDALVFYAFDLPFAHGRDLTQMPLTERRALLRSVLQPASSDR
VRFSEAFEARPADLVASACRLGFEGVIGKRKDSVYASRRSTDWIKLKCSHRQEFVIGGYT
DPQGSRTGIGSLLLGVHDEGGALRYAGNVGTGFSERVLADLARRLGTLRTQDSPFAQPRS
IPRKVHWVRPTLVAEVSFAEWTKEGKVRHAVFRGLRDDKPAAAIVHEEPAHLQGAAPSRA
ARVGGLQVTSPARVVDPSTGFTKLDLVRYYATVAPLMLPHLQGRPVSLLRAPQGLEGELF
FQKHLDTGALDGVSALSPDLDPGHPPLLEVATAQGLLSAAQMNTVEFHTWNARKDRIERP
NRITFDLDPGEGVPWAHVQEGAALVRLMLTELGLPSFLKTSGGKGLHVVVPIKRLHGWDA
VKDFSQAVVQHLARTLPQRFVAKSGPRNRVGKIFVDYLRNGFGATTACAWTARARPGMGV
SVPVAWQELDALTGGAHWTVQTVDRRLKTGNGPWSGYDEAAVSIGPAIKALGEKRHL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcaaagacccgctggcggtgtacaagcaaaagcgcaactttgccgtgacgcca
gagcccgcggacggcggagcgcagtcgcaggcgctgcagtacgtaatccagaagcactgg
gccagccgcctgcactatgacctgcgcctggagctggacggcaccatgaagagctgggcc
gtacccaagggccccagttacgatcccgcggacaaacgcatggccgtgcaggtggaagac
cacccgatttcctacaaccaattcgaagggcagatcccgccgcgccaatacggcgcgggg
cgggtcatcatctgggaccgcggctattgggtaccgcagggcaatccgcgcgaagactac
cgcaaggggaagctcaagttcgagatccacggacacaaattgcacggccactggaccctg
gtgcgtatgcatggccgggacgacgataagcagcccccctggctgctgatcaaggagcgc
gacgggctggagcgtgcggccgaggagttcaacgtggtcgacgaaatgcccgacagcgtg
gcagaccagccgccggttgcgccaccagcgcgcgcattcgctcagcgggccgggcccgcg
cagatgcagcccacggcagcggcggtgacgtggacatccgcgcccacggcaccgctgcct
gaccagctatccccgcaacttgccacgctggtggacggaccgccggccgaccttacgcag
tggctgtgggagctcaagttcgacggctatcgcatgctggcccgggttcagcgcggcaag
gcacggctgtacacccgtaacggcaacgactggaccgccaggatgcccgccctggcgcaa
gcgctggccgccttgccgctgtcctctgcatggatcgacggcgaggtgctggtgctggac
gcccagggtgtccccgacttccaggcgctgcagaatgcgtttgacgggcgatcgaccgac
gcgctggtcttttacgccttcgacttgccttttgcgcacgggcgtgatctgacgcagatg
cccctcactgaacggcgtgcgctgctgcgcagcgtgctgcagccagcctcctcagaccgt
gtgcggttcagcgaagcgttcgaagcccggccggcggacctggtggcctcggcctgccgg
ctgggatttgaaggggtgatcggcaagcgcaaggacagcgtgtatgcctcgcgccgcagc
acggactggatcaagctcaagtgcagccatcggcaagagttcgtcatcggcggatacacc
gacccgcagggctcacgcacagggatcggttcactgctgctgggcgtgcatgacgagggc
ggcgccctgcgctatgccggcaatgtgggcacgggtttcagcgagcgcgtcctcgcggac
ctggcccggcggctaggcactttgcgcacccaggacagcccgtttgcccagccgcgctcc
atcccccgcaaggtgcattgggtgaggcccacgctggtggcggaggtttccttcgccgaa
tggacgaaagagggcaaggtgcgccacgccgtgttccgcgggttgcgcgacgacaagccc
gccgccgccatcgtccacgaggagcctgcgcacctgcagggggctgcgcccagccgcgcc
gcgcgcgtgggggggctgcaggtgacaagcccggcgcgcgtggtggatccctccaccggg
ttcaccaagcttgatctggtgcggtactacgccacggtagcgcccctcatgttgccccac
ctgcaggggcggccggtgtccctgctgcgggcgccgcaaggtctggagggcgagctcttc
tttcaaaagcacctggacacgggggcattggacggggtgagtgcgctgtcacccgacctg
gatcctggccacccgccgctgctggaagtggccacggcgcagggcctgctgtcggccgcg
caaatgaacaccgtggagtttcacacctggaatgctcgcaaggaccggattgagcggccc
aaccgcatcaccttcgacttggatccgggcgagggcgtgccgtgggcgcacgtgcaagag
ggcgcagcgctcgtgcgcttgatgctcaccgagctgggcctgccatcgttccttaagacc
agcggcggcaaggggctgcatgtggtggtgcccatcaagcgactgcacggctgggatgcc
gtgaaagacttcagccaagccgtggtgcagcatctggcgcgcaccctgccgcagcgtttc
gtggccaagagcgggccccgcaaccgcgtgggaaagatctttgtggactacctgcgcaat
ggctttggagccaccacggcctgtgcgtggacggcgcgcgcgcggccgggcatgggcgtg
tccgtgcccgtcgcctggcaggaactggacgcgctcacgggtggcgcccactggacggtg
cagaccgtggaccggcgcttgaagacgggcaatggcccttggtcgggctatgacgaggct
gccgtgtccatcgggccggcgatcaaggcgcttggggaaaaacgccacctatag
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