Daphnia pulicaria: 124311222
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Entry
124311222 CDS
T08670
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
dpz
Daphnia pulicaria
Pathway
dpz03022
Basal transcription factors
dpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124311222
09124 Replication and repair
03420 Nucleotide excision repair
124311222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124311222
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124311222
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124311222
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124311222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
FYVE_2
C1_2
Motif
Other DBs
NCBI-GeneID:
124311222
NCBI-ProteinID:
XP_046631575
EnsemblRapid:
LOC124311222
LinkDB
All DBs
Position
8:complement(13009558..13011405)
Genome browser
AA seq
405 aa
AA seq
DB search
MADEEETNEYRWESGYEKTWEAIKEDDDGLLESNVAEIVARAKRKRAALKATGAIQLGMM
RHLFVVIDASECMFLQDLKPTRFLCVLKLLELFVHEFFDLNPISQLGILTTKLKRSEQVS
ALAGNQKKHIEALQQMKDTSCEGEPSLQNSLERAMNGLKNMPAHSSREVLVLFGSLTTCD
PGDIQKTIKSLKENNIRVSIIGLAAEVRICREIAKRTGGTYNVLLDDHHLKELILNQVQP
PAVAGSMEASLVKMGFPGGKTGSSDGASDSAADHAPAYCLCHIENETSCLMGNNSGYNCP
QCGSRYCELPVECKQCGLTLVSAPHLARSYHHLFPIKPFIERAEVPEMTHCFACAKPFGE
LDPNVYECENCKQIVCLDCDLFIRETLHTCPGCASDPVTAQMKTN
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgaagaagaaactaatgagtatcgctgggagtcgggatatgaaaaaacatgg
gaagctattaaagaagatgatgatggtttattggaatcaaatgtggctgaaatagtagcc
cgagccaaaaggaaaagagctgccctgaaagccaccggtgcgatccaacttggaatgatg
aggcatctctttgttgttatagatgcttcagaatgcatgtttttgcaggatttgaaacct
actcgcttcctctgtgttttaaagttattagaattgtttgttcatgaattctttgacctt
aacccaataagtcagttgggaatattaacaaccaaactgaagcgcagtgaacaagtttca
gctcttgctggtaaccagaaaaagcatattgaggcattacaacaaatgaaggatacttca
tgtgaaggggagccatcacttcaaaactcattagaaagggctatgaatgggctgaaaaac
atgcctgcccactctagtagagaagtgttggtgttatttggcagcttgactacttgcgat
ccgggtgacatacaaaaaacgatcaagtctttgaaggagaataacattcgggtttcaatc
atcgggctggcggcagaagtaaggatttgccgagaaattgccaaaagaactggtggcact
tacaatgttcttctcgacgatcatcatctgaaggaactcattctaaatcaagtgcaacca
ccggctgtagcaggttctatggaggcctcactggtgaaaatgggttttcctggaggtaaa
actggttcaagcgacggagcttcagattctgctgcagatcacgccccagcttattgtctt
tgccatattgaaaacgaaacatcatgtttaatgggcaataacagtggctataactgtccg
caatgtggaagtcgttattgtgagctcccagttgagtgcaaacaatgcggattgactctg
gtttctgcccctcatcttgcccgttcttatcaccatctctttcccatcaaaccatttata
gaacgagcagaagttcccgagatgacgcattgctttgcgtgcgccaagccttttggtgaa
ttggatcccaatgtttacgagtgtgaaaactgcaaacagattgtatgtcttgactgcgac
ctattcatacgagaaacattgcacacatgccctggatgtgctagtgatccagtcacagct
caaatgaaaactaactga
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